Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35400 445 / 3e-155 Pseudouridine synthase family protein (.1.2) AT3G06950 66 / 1e-11 Pseudouridine synthase family protein (.1) AT1G20370 61 / 8e-10 Pseudouridine synthase family protein (.1) AT1G76120 56 / 2e-08 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022949 [exp] 749 / 0 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2) Lus10039480 [exp] 57 / 8e-09 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10005641 [exp] 55 / 6e-08 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 55 / 7e-08 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147400 [exp] 504 / 7e-178 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2) Potri.008G206200 [exp] 62 / 2e-10 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 57 / 2e-08 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 56 / 3e-08 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.003G008500 [exp] 44 / 0.0001 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10027594 pacid=23151204 polypeptide=Lus10027594 locus=Lus10027594.g ID=Lus10027594.BGIv1.0 annot-version=v1.0 ATGGAAGAGCAGATACAATCAGAGGAGAAGGTTTATTTCCATTACAGTCACACCGTTCCCTGCAAATTCGCCAGATGGACCGCAAGGGAAAGCTTTGAGT TCATGTACGGTCGGCACTGGCAACAAGTTGTGGATTTCTATTCCAATGTGGTGAATGGGCAGTCGTCGCTGTTTGAACTTTTTGAAAATGGTCAGGCACT TTTGAAACTTGATGATGCTAAACTTTCTGAGGATTGTAATAGAACCAACTGTGAGGGTGGTTTGAAGGATGAGAGAACAGGGAGGTGGGAAAGACTAACA TTCAAGATAGTTCTTTCCTATCATGGGTGTTCGTTTGATGGGTGGCAGAAGCAACCTGGCCTCAACACTGTTCAGGGCTTAATAGAACAGTGTCTGGGCC AATTCGTCGATGAGAGGAAAGCTCAACTACTTAAAGAAAAATGCAAACCATTGGAAGGCTGTTCTTTTGTTGCTGGTCGCACAGACAAAGGAGTGTCAGC TCTACAGCAAGTGTGTTCTTTCTATACATGGAGAAAGGATATTATGATTTGCGAAATTGAAGATGTTATCAACAACTCAGCACCAGGGAAAATCAGGGCT GTGTCAATTTCTGAGGTTTCACGTTCATTCCATCCTAATTTTTCAGCAAAATGGAGGCGATACTTGTATATCTTTCCTCTTAATGACGGTGAAAATAAGG AGCCAGGCTTCGAAAGTGACGGTGACCAGGACGATTTAAGTGTCTATGGACACTGCAGAGAGCAGACAGTTGGGTCCGATGAGCTCAATGGTCAAGAGGA GATTAAGAACTTGACTGTAAGTTGTGAGGTTGAACTAGAAGAAAGTGCAGAGAAACCCAAGACATTTGCTGTATGCAAGGTTAACCGACTTCTACAGAAA TTAGAGGGGAAGTTATTATCTTACACAGTATTTGCCCGCGACACCAAGGCTTCCAGAAGCACAGGTCCCCCAACAGAGTGCTTCATCTATCATGCCCGAG CAGCAGCAGCCAGATTACCCCACCCTGATTCTGGAGCAGGAAGAAAAGTTATGTGTGTGGAGCTCGTCGGTAATCGCTTCCTGCGCAGGATGGTACGGGT TCTGGTGGCGACATCGATAAGAGAGGCGGCTGCTGGTGCAGAAGATGATGCTCTGTTGAAGCTGGTGGATGCTACATGTAGAAGGGCCACTGCCCCTCCT GCTCCTCCAGAAGGTCTTTGTTTGGTTAATGTAGGGTATACTGAATTCGACCCTCAGGACTGCATCATTCCTTGA
AA sequence Show only first row Show all	>Lus10027594 pacid=23151204 polypeptide=Lus10027594 locus=Lus10027594.g ID=Lus10027594.BGIv1.0 annot-version=v1.0 MEEQIQSEEKVYFHYSHTVPCKFARWTARESFEFMYGRHWQQVVDFYSNVVNGQSSLFELFENGQALLKLDDAKLSEDCNRTNCEGGLKDERTGRWERLT FKIVLSYHGCSFDGWQKQPGLNTVQGLIEQCLGQFVDERKAQLLKEKCKPLEGCSFVAGRTDKGVSALQQVCSFYTWRKDIMICEIEDVINNSAPGKIRA VSISEVSRSFHPNFSAKWRRYLYIFPLNDGENKEPGFESDGDQDDLSVYGHCREQTVGSDELNGQEEIKNLTVSCEVELEESAEKPKTFAVCKVNRLLQK LEGKLLSYTVFARDTKASRSTGPPTECFIYHARAAAARLPHPDSGAGRKVMCVELVGNRFLRRMVRVLVATSIREAAAGAEDDALLKLVDATCRRATAPP APPEGLCLVNVGYTEFDPQDCIIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35400			Pseudouridine synthase family ...		Lus10027594 [exp]	0	1
AT2G15000			unknown protein		Lus10026596 [exp]	5.3	0.9167
AT1G65900			unknown protein		Lus10020799 [exp]	12.5	0.8775
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	14.3	0.9111
AT1G24310			unknown protein		Lus10015795 [exp]	14.4	0.9159
AT3G58570			P-loop containing nucleoside t...		Lus10015978 [exp]	15.9	0.8915
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Lus10021754 [exp]	18.2	0.9081
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	35.2	0.8990
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10023871 [exp]	37.9	0.8898
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	39.2	0.9017
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	39.3	0.9034

Compare expression of checked genes

Lus10027594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.