Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20700 76 / 8e-17 Protein of unknown function (DUF581) (.1) AT1G74940 75 / 2e-16 Protein of unknown function (DUF581) (.1) AT1G19200 71 / 9e-15 Protein of unknown function (DUF581) (.1) AT1G22160 67 / 4e-14 Protein of unknown function (DUF581) (.1) AT5G11460 61 / 5e-11 Protein of unknown function (DUF581) (.1) AT5G65040 57 / 7e-11 Protein of unknown function (DUF581) (.1) AT2G44670 54 / 7e-10 Protein of unknown function (DUF581) (.1) AT4G17670 55 / 2e-09 Protein of unknown function (DUF581) (.1) AT1G78020 54 / 4e-09 Protein of unknown function (DUF581) (.1) AT5G49120 54 / 5e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022948 [exp] 406 / 1e-146 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 62 / 9e-12 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 61 / 1e-11 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 59 / 2e-10 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 56 / 4e-09 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 54 / 9e-09 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 55 / 1e-08 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 54 / 2e-08 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 51 / 6e-08 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146800 [exp] 157 / 6e-48 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 141 / 1e-41 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 88 / 4e-21 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 63 / 1e-11 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 63 / 2e-11 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 60 / 2e-11 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 59 / 4e-10 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 56 / 6e-10 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 56 / 2e-09 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 53 / 6e-09 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10027595 pacid=23151274 polypeptide=Lus10027595 locus=Lus10027595.g ID=Lus10027595.BGIv1.0 annot-version=v1.0 ATGGAGAAAAAGGCGCCCAGAAGAAGCTTCGTTAACGGTGGAGTTGGGTTGGGAATAGTCGCTGCGTTGACTGATTCCACCGATCGCACGAATATCTCTC ACCTGACTGCTGCTCTGTCCATGAGATCCAATCCAATCCCGATTATGGTCCCTAATTTCAACTTCAATTTGGGCGATCAGCCTCAAACTGCAGGCAGTGT CGGGTCTGAGAGCGATGAGTTGTATACCTGTGTGGTTTCTAATGTTGGCAATGACAAGGCGATGAACAAGTTTGTTTACTATGGGGATAAGGTTTCTGGG TTTTGTGTTGACCCTAGTCCGGGGATGTTTTATGCTTCTTCGTCGCCGATGATGATGAATCCTGTTTTGGGTGATTGGACCAGCGGCTTTCCTAACCAAG ATTTCTTGGCTTCTTGCTTTCTCTGCAAAAAGTTGCTCCATGGGCTGGATATTTTCATGTACAGGGGGGAGAAAGCATTTTGTAGCGTACAGTGCCGGGA ACGCCAGATAAGGAGTGAAAAGTACAGTCTGAAATACGGTGGTGAAATCAGGAAATCTGCGCATGAATGCTCCTCCATGTCTCCCTGCTCTTCACCTCAG GTTTACCTTGCTGAGGTTGCTGCTGCATAA
AA sequence Show only first row Show all	>Lus10027595 pacid=23151274 polypeptide=Lus10027595 locus=Lus10027595.g ID=Lus10027595.BGIv1.0 annot-version=v1.0 MEKKAPRRSFVNGGVGLGIVAALTDSTDRTNISHLTAALSMRSNPIPIMVPNFNFNLGDQPQTAGSVGSESDELYTCVVSNVGNDKAMNKFVYYGDKVSG FCVDPSPGMFYASSSPMMMNPVLGDWTSGFPNQDFLASCFLCKKLLHGLDIFMYRGEKAFCSVQCRERQIRSEKYSLKYGGEIRKSAHECSSMSPCSSPQ VYLAEVAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	0	1
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	1.4	0.9096
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10022375 [exp]	1.4	0.9104
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	5.2	0.9033
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	5.9	0.8787
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	7.3	0.8786
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	8.5	0.8993
AT2G25625			unknown protein		Lus10008096 [exp]	8.9	0.8604
AT3G01860			unknown protein		Lus10041572 [exp]	9.9	0.8668
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	10.2	0.8692
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	10.5	0.8714

Compare expression of checked genes

Lus10027595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.