Plant FIBer expression Database

Lus10027596 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57140 511 / 0 ATPAP28, PAP28 purple acid phosphatase 28 (.1)
AT5G63140 322 / 1e-107 ATPAP29, PAP29 purple acid phosphatase 29 (.1)
AT2G46880 290 / 8e-95 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
AT3G10150 98 / 2e-22 ATPAP16, PAP16 purple acid phosphatase 16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022947
[exp]
793 / 0 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1)
Lus10010289
[exp]
333 / 7e-112 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1)
Lus10009863
[exp]
329 / 1e-110 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1)
Lus10018030
[exp]
97 / 8e-22 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1)
Lus10031039
[exp]
81 / 3e-16 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1)
Lus10016863
[exp]
42 / 0.001 AT5G58200 369 / 2e-128 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G074500
[exp]
580 / 0 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
Potri.006G074300
[exp]
573 / 0 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1)
Potri.002G183000
[exp]
345 / 4e-116 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1)
Potri.002G183200
[exp]
340 / 2e-114 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1)
Potri.014G109100
[exp]
337 / 2e-113 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1)
Potri.016G042500
[exp]
105 / 4e-25 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Lus10027596 pacid=23151202 polypeptide=Lus10027596 locus=Lus10027596.g ID=Lus10027596.BGIv1.0 annot-version=v1.0
ATGAAATTCCAAATAACTTCACAATCGACGACCAATTCCTTCCTTTATTTGATTCTCATACTCTCCACCGTCTTTCTCCTTCACTCCCAAATCGCCCCCA
GGTTGCTCGTAGGCCACCAACCACTGTACCTGAAGCGGTCATCGGATCTCCCCTTACGGTTTCGAGACGATGGCACTTTCAAGATCCTCCAGGTTGCTGA
CATGCATTTCGGCACCGGAATGGTCACTCGTTGCAGAGACGTAATGGCTTCTGAATTCGACTACTGTTCTGATCTCAATACCACCCGCTTCCTCCAGAGG
ATGATCGAATTTGAGAAACCTGATTTCATCGCCTTTACAGGGGATAATATATTTGGAAGTAGTACCACTGATGCTGCTGAATCGTTGCTTCGTGTCTTTA
GTCCAGCCATGGACTCTAAACTTCCGTGGGCAGCAGTGTTAGGTAACCATGACCAGGAATCTACAATGACTCGTGAAGAATTGATGTGTTTTTTATCGCT
TATGGATTACTCTGTATCACAAGTCAATCCATCTACTACAAGACCTGTGAATTATGTTGAATTGCCTAAAACAAGGAAAATTGATGGATTTGGCAATTAT
GATCTCCAAGTATATGGTGCTCCTGGCTCTAATGTGGCAAATCAAAGTGTCATGAATCTTTACTTCCTTGATAGTGGAGACAGAGAATTAGTTCAAGGAA
GACGTACTTATGGGTGGATTAAAGAATCTCAGCTTCATTGGCTCCATGATGTTTCTAACAGAAATAAGGACCAGAAGGAGAAACTTCATTACATAACTGA
GGATTCACCTATGGTTGCAAATCCTGCACTTGCTTTCTTCCACATCCCGATTCCTGAAATTAGACAGCTATACTATCAAAAGATCATTGGCCAATTTCAA
GAAGGTGTTGCTTGTTCATCAGTGAACGCAGGAGTCTTGCAGGCCTTTGCATCAATGGGAGATGTGAAGGCTGTTTTTATGGGCCACGATCACACCAACG
ACTTCTGTGGAACTTTAAGTGGTATCTGGTTTTGTTACGGAGGTGGGTTTGGATACCACGGTTATGGAAAAGCTGGGTGGCCACGCAGAGGAAGAATAAT
ATTAGCTGAACTGGAGAAGGGTGAACAGTCATGGAGAGGAGTGGAAAGAATCAGGACGTGGAAGCGTTTAGATGACGAACGATTAAACAAGATCGATGAA
CAGATCCTGTGGGAATCGCAGAAGTCAAGATGA
AA sequence
>Lus10027596 pacid=23151202 polypeptide=Lus10027596 locus=Lus10027596.g ID=Lus10027596.BGIv1.0 annot-version=v1.0
MKFQITSQSTTNSFLYLILILSTVFLLHSQIAPRLLVGHQPLYLKRSSDLPLRFRDDGTFKILQVADMHFGTGMVTRCRDVMASEFDYCSDLNTTRFLQR
MIEFEKPDFIAFTGDNIFGSSTTDAAESLLRVFSPAMDSKLPWAAVLGNHDQESTMTREELMCFLSLMDYSVSQVNPSTTRPVNYVELPKTRKIDGFGNY
DLQVYGAPGSNVANQSVMNLYFLDSGDRELVQGRRTYGWIKESQLHWLHDVSNRNKDQKEKLHYITEDSPMVANPALAFFHIPIPEIRQLYYQKIIGQFQ
EGVACSSVNAGVLQAFASMGDVKAVFMGHDHTNDFCGTLSGIWFCYGGGFGYHGYGKAGWPRRGRIILAELEKGEQSWRGVERIRTWKRLDDERLNKIDE
QILWESQKSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Lus10027596
[exp]
0 1
AT2G13560 NAD-ME1 NAD-dependent malic enzyme 1 (... Lus10018939
[exp]
2.4 0.8180
AT1G22540 Major facilitator superfamily ... Lus10009462
[exp]
4.6 0.7833
AT1G23800 ALDH2B7 aldehyde dehydrogenase 2B7 (.1... Lus10012999
[exp]
6.5 0.8374
AT4G33410 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Lus10027484
[exp]
13.0 0.8231
AT4G36760 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPT... Lus10024034
[exp]
18.7 0.7441
AT1G69220 SIK1 Protein kinase superfamily pro... Lus10037070
[exp]
18.7 0.7745
AT5G50850 MAB1 MACCI-BOU, Transketolase famil... Lus10043191
[exp]
19.1 0.7858
AT5G14670 ATARFA1B ADP-ribosylation factor A1B (.... Lus10029144
[exp]
21.5 0.7793
AT3G26020 Protein phosphatase 2A regulat... Lus10011381
[exp]
22.8 0.7662
AT5G51920 Pyridoxal phosphate (PLP)-depe... Lus10037025
[exp]
28.3 0.7680

Lus10027596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.