Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 588 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 540 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 525 / 2e-178 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 422 / 5e-139 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT1G72460 375 / 7e-121 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 374 / 3e-120 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 335 / 5e-105 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 331 / 3e-103 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 315 / 9e-98 RLK902 receptor-like kinase 902 (.1) AT1G68400 312 / 2e-96 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022946 [exp] 1180 / 0 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 836 / 0 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 531 / 0 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 421 / 8e-138 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 415 / 1e-135 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 380 / 1e-122 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 346 / 2e-111 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 331 / 1e-107 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 320 / 2e-101 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147300 [exp] 690 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 578 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 573 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 562 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 469 / 3e-157 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 416 / 3e-135 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 409 / 1e-133 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 399 / 3e-130 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 371 / 2e-119 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 340 / 1e-110 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027597 pacid=23151277 polypeptide=Lus10027597 locus=Lus10027597.g ID=Lus10027597.BGIv1.0 annot-version=v1.0 ATGGCTCGTCATCATAATAACAATGCGAACATATATTTGTTTGTCCTTCTCATTTCCCTCTACCTTGTTCCCTCCTGGGGGCAAACAGAGTCTGAGATTC TCCTCAAGTTTAAGGCCTCTCTAGGGAATGCCAAGGCCCTCGTGGATTGGAACCAGGGAACCAACGTTTGCGATGGTGATAGAGCCAATTGGATAGGTGT GCTTTGTGGGGAAGGTTTGGTTTGGGGTGTACAACTCGAGACGATGGGGCTAAAGGGGAAGATCGATGTGGATAGTCTGGCGAAACTGGAGGAGCTAAAA ACATTGAGCCTAATGAACAATGAATTCGAAGGTGCCTTGCCGGAGGTGAAGAAGCTAGGAGGGTTGAGGTCGTTGTACTTGTCGAATAACCAATTTAGCG GGGAGATTCCAGGGGATGCTTTCGAAGGGATGACCAAATTGAAGAAACTGTATCTGTCGGGGAATAAGTTTACAGGGGAAATCCCATCTTCATTAGCTGG CCTATCCAAGCTTACAACCTTGAAGCTTGAACAAAATGAATTCACAGGCCAACTGCCTAAATTTACAGCCAAGTTTGAGTCTTTCAATGCTTCAAATAAC ATCTTGGAAGGTCCCATTCCTCCTACCCTCTCCAACATGGATGCATCTGCATTTTCTGGGAACAAAGAGTTGTGTTCAAAACCATTATCAAGATGCAAAT TAGGCATTAATGTGGCCGGCGGCGCCCCAGTCCCATCCCCAATGGCGACCCCCACACCAACAGGAAGCATTGCGACGGACTCAACTGATGTGGACAAGGA CAACCTAGCCGATGATACTCTAGCGGACGCCGGACCTGGTCGGAAGCCATCCACCGCCAGCATTGCATTCGTGGCCGTCGTTGTCGGGGTAGCAGTGTGT GGGATCATCGCAGCTGCACTCATCCTGATGCGGCGCCGCAAACAAATGACTGATCATGAACCATCATCAATCGAGTCCCCACAGCAGGATGTCAGTCACC ATAAGAGGGCCCCATCCCAAGACAACAAAATCAACAGTATGAACAAGGGGGTGAGTGCAGTGGCAATGGCAGGAGCGGAGGTGAAGCTATCTTTCGTAAG GGAGGACAGGGGGAAGTTCGAGCTGCAAGACTTGCTCAAGGCGTCGGCGGAGATACTAGGGAGCGGGTGTTTCGGGGCGTCGTACAAGGCGGCACTAACC ACGGGGGAGGTGATGGTTGTCAAGAGGTTTAAGCAGATGAATAATGTGGGTAGGGAAGAGTTTCACGAGCATATGAGGCGGCTTGGGAGGTTGAGGCATA CAAACTTGTTGCCCCTTGTTGCTTATTACTACAGGAAGGAAGAGAAGCTCTTGGTTCATGACTTTGTTCCCTATGGTAGTTTGGCTGTCCATCTCCATGG ACAACAACAACCCACCTTAGAGTGGGACAACAGGTTGAAGATAATCAAGGGAGTAGCAAAGGGACTAGCTTACCTTTATAAGGAACTCCCTAGCTTGATG GCACCTCATGGACACCTGAAATCAAACAATGTCCTCTTGGACGAAAACTTCGAGCCATACCTCACTGACTACGCACTCATCCCAGTCATCAACTCGGAGA ACACACAAGAGCTCATGGTTGCCTACAAATCCCCAGAGTATCTCCGTCATGGCCGGGTCACTAAAAAGACCGACGTATGGTCACTTGGGATGCTCATCCT CGAGGTCATTACTGGTAAACTCCCTTCCACCTTCCTCAAACAAGGAGGAGGAAGCAACAATAGTGACGGCAGTAGCATTCCTAGTAGAGCAGGAGATGAT AAGGAGGAAGTGGATCTGGCGACTTGGGTAACAAGTATACCAGCAGAGCAATGGTGGAGAGATGTAATTGACAAACAACTGTGGGAGGAGATGAACAACC ATAACAAAGGGGAAATGGTGAAGCTTGTGAAGATAGGAGTGAGTTGTTGCCAAGAGGACTTGGAGAAGAGGCCTGATTTGAAGGAGGCATTGCAGAGGAT TGATGATATCAAGGTCAACGATGGGGATAACTTTGATGATGATTTCTACTCCTTGCATAGTGAAGGTGTTGGTGTTGTTGTTAGTGGGGATAGAAGGAGG CCTTCTAGGCAGTTGTCTGCTGATTTCAGCGACATATCTTGA
AA sequence Show only first row Show all	>Lus10027597 pacid=23151277 polypeptide=Lus10027597 locus=Lus10027597.g ID=Lus10027597.BGIv1.0 annot-version=v1.0 MARHHNNNANIYLFVLLISLYLVPSWGQTESEILLKFKASLGNAKALVDWNQGTNVCDGDRANWIGVLCGEGLVWGVQLETMGLKGKIDVDSLAKLEELK TLSLMNNEFEGALPEVKKLGGLRSLYLSNNQFSGEIPGDAFEGMTKLKKLYLSGNKFTGEIPSSLAGLSKLTTLKLEQNEFTGQLPKFTAKFESFNASNN ILEGPIPPTLSNMDASAFSGNKELCSKPLSRCKLGINVAGGAPVPSPMATPTPTGSIATDSTDVDKDNLADDTLADAGPGRKPSTASIAFVAVVVGVAVC GIIAAALILMRRRKQMTDHEPSSIESPQQDVSHHKRAPSQDNKINSMNKGVSAVAMAGAEVKLSFVREDRGKFELQDLLKASAEILGSGCFGASYKAALT TGEVMVVKRFKQMNNVGREEFHEHMRRLGRLRHTNLLPLVAYYYRKEEKLLVHDFVPYGSLAVHLHGQQQPTLEWDNRLKIIKGVAKGLAYLYKELPSLM APHGHLKSNNVLLDENFEPYLTDYALIPVINSENTQELMVAYKSPEYLRHGRVTKKTDVWSLGMLILEVITGKLPSTFLKQGGGSNNSDGSSIPSRAGDD KEEVDLATWVTSIPAEQWWRDVIDKQLWEEMNNHNKGEMVKLVKIGVSCCQEDLEKRPDLKEALQRIDDIKVNDGDNFDDDFYSLHSEGVGVVVSGDRRR PSRQLSADFSDIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35390			Leucine-rich repeat protein ki...		Lus10027597 [exp]	0	1
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	3.2	0.8424
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	10.9	0.7907
AT1G12340			Cornichon family protein (.1)		Lus10004023 [exp]	19.0	0.7506
AT2G24970			unknown protein		Lus10026900 [exp]	19.4	0.7537
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	19.4	0.7781
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	23.0	0.7846
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10005044 [exp]	23.2	0.6918
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	24.2	0.7289
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	29.7	0.6918
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	30.0	0.7689

Compare expression of checked genes

Lus10027597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.