Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 566 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT5G07990 214 / 5e-63 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 210 / 2e-61 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G13290 206 / 4e-60 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT4G22710 206 / 1e-59 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 204 / 6e-59 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G12300 203 / 6e-59 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 202 / 2e-58 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT1G74550 200 / 6e-58 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT3G48290 198 / 4e-57 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035011 [exp] 593 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10034449 [exp] 583 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 543 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 342 / 2e-114 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019457 [exp] 215 / 3e-63 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10033524 [exp] 212 / 4e-62 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 210 / 2e-61 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10017961 [exp] 207 / 3e-60 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 206 / 6e-60 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146100 [exp] 773 / 0 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.013G157900 [exp] 590 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.019G130700 [exp] 581 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.003G006000 [exp] 210 / 1e-61 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.016G031000 [exp] 210 / 1e-61 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 210 / 2e-61 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G083500 [exp] 205 / 1e-59 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 205 / 1e-59 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.014G020500 [exp] 203 / 7e-59 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G084800 [exp] 202 / 1e-58 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027598 pacid=23151300 polypeptide=Lus10027598 locus=Lus10027598.g ID=Lus10027598.BGIv1.0 annot-version=v1.0 ATGACATCTAATACAAACCCCATTCTATTCCTCTTCTTGGCCTCAATAGGAATCATAGTAATAATCTCTATCACACACTTCTCCTTCCCTCTCATCCTCC TCTTCATATTAACGGCCATTTTCCTAACCAAATTCGCCCGCAACACCAACCCGAACCTCCCACCCGGCCCTATTTCCATCCCAATCTTTGGCAACTGGCT CCAAGTAGGCAATGACATCAACCACAGGCTCCTATCCACCATGTCCCACACCTATGGACCCTTGTTCCTCCTCAAGCTTGGCTCCAAGAACCTCGTTGTC GTCTCGGACCCCAAACTCGCTGACCAAGTCCTTCACACCCAGGGAGTCGAATTTGGGTCCCGCCCACGTAACGTGGTGTTCGACATCTTCACGGGGAATG GGCAGGACATGGTGTTCACCGTCTATGGGGAGCATTGGAGGAAGATGAGGCGAATCATGACGCTCCCGTTTTTCACAAACAAGGTTGTGCACAACTATAG CGAGATGTGGGAGGATGAGATGGACTTGGTGGTTAGAGACCTTGCAGGAAATTCGAGGAATAAGGAACAAGGGACGGTTGTGAGGAGAAGGCTGCAACTC ATGTTGTACAACATAATGTACAGGATGATGTTTGATTCCAAGTTTGAAAGTGTTGAAGACCCTTTGTTTATCGAAGCCACTAAGTTTAACTCGGAGAGGA GCAGGTTGGCTCAGAGCTTCGAGTATAACTATGGCGACTTCATTCCGTTGTTGAGGCCGTTCTTGAAAGGGTATTTGAACAAGTGCAGAGATCTGCAGAA GAGGAGGCTGGCATTCTTCAACAACTACTACGTTGAGCAGAGAAGGAAGATAATGGTTGCAAACGGGGAGAAAACCTGTGCCATGGATCACATAATTGAT GCTGAAATGAAAGGTGAGATCAGTGAGGCTAACGTACTATACATTGTGGAGAACATCAATGTTGCCGCGATAGAGACCACGCTTTGGTCAATGGAATGGG CAATAGCTGAGCTGGTGAATCATCCAGAGGTCCAGAAAAAGATCCGCGATGAGATTTCAAATGTACTCCAGGGGAATCCAGTTACAGAATCAAACCTCCA TGATCTGCCATACCTTCAGGCTGTAGTGAAAGAGACACTAAGGATCCACACTCCAATTCCTTTGTTGGTTCCCCACATGAACCTCGAGGAAGCCCAGCTC GGTGGCTACACCATACCTAAGGAGTCCAAAGTCGTCGTAAACGCATGGTGGCTTGCCAACAACCCAGCTCTGTGGGAGAACCCGGAGGAGTTCAGGCCGG AGAGGTTCTTGGAGGAGGAACACAACACAGATGCTGCTGTCGCTGGCGGAAGAGTAGATTTCAGGTTCCTGCCATTCGGGATGGGACGGAGGAGTTGCCC TGGGATCATACTAGCACTCCCCATCTTGGGTCTGGTGATTGCAAAATTGGCAACTAAATTCGAAATGAAGGCTCCTCCAGGATTTGAGAAGATAGACGTC AGTGAGAAAGGAGGGCAGTTCAGCTTGCACATTGCAACACATTCCACAGTAGTGTTCAACCCCATCAGCAATTGGAATTGA
AA sequence Show only first row Show all	>Lus10027598 pacid=23151300 polypeptide=Lus10027598 locus=Lus10027598.g ID=Lus10027598.BGIv1.0 annot-version=v1.0 MTSNTNPILFLFLASIGIIVIISITHFSFPLILLFILTAIFLTKFARNTNPNLPPGPISIPIFGNWLQVGNDINHRLLSTMSHTYGPLFLLKLGSKNLVV VSDPKLADQVLHTQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGEHWRKMRRIMTLPFFTNKVVHNYSEMWEDEMDLVVRDLAGNSRNKEQGTVVRRRLQL MLYNIMYRMMFDSKFESVEDPLFIEATKFNSERSRLAQSFEYNYGDFIPLLRPFLKGYLNKCRDLQKRRLAFFNNYYVEQRRKIMVANGEKTCAMDHIID AEMKGEISEANVLYIVENINVAAIETTLWSMEWAIAELVNHPEVQKKIRDEISNVLQGNPVTESNLHDLPYLQAVVKETLRIHTPIPLLVPHMNLEEAQL GGYTIPKESKVVVNAWWLANNPALWENPEEFRPERFLEEEHNTDAAVAGGRVDFRFLPFGMGRRSCPGIILALPILGLVIAKLATKFEMKAPPGFEKIDV SEKGGQFSLHIATHSTVVFNPISNWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	1.4	0.9902
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	2.0	0.9908
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	3.9	0.9891
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	4.0	0.9884
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	5.0	0.9863
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	5.5	0.9781
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	6.3	0.9808
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10038515 [exp]	6.5	0.9784
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	7.0	0.9836
AT3G19615			unknown protein		Lus10031599 [exp]	7.7	0.9803

Compare expression of checked genes

Lus10027598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.