Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06990 1603 / 0 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 877 / 0 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 399 / 2e-120 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 231 / 2e-62 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT4G32700 99 / 1e-20 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT5G61140 84 / 4e-16 U5 small nuclear ribonucleoprotein helicase (.1.2) AT2G42270 83 / 8e-16 U5 small nuclear ribonucleoprotein helicase (.1) AT1G20960 81 / 3e-15 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT3G27730 72 / 2e-12 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022945 [exp] 1066 / 0 AT2G06990 887 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 892 / 0 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 828 / 0 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 803 / 0 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 405 / 2e-122 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 240 / 3e-65 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10030818 [exp] 196 / 4e-51 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10022115 [exp] 108 / 2e-23 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10040524 [exp] 80 / 1e-14 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078000 [exp] 1686 / 0 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 989 / 0 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 869 / 0 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 398 / 8e-120 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 228 / 2e-61 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.018G036600 [exp] 101 / 2e-21 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.015G056501 [exp] 88 / 3e-17 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.015G095500 [exp] 76 / 1e-13 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 76 / 2e-13 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.001G348200 [exp] 62 / 3e-09 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF08148 [flax] [poplar] DSHCT DSHCT (NUC185) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10027599 pacid=23151263 polypeptide=Lus10027599 locus=Lus10027599.g ID=Lus10027599.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAATCAGTAGCCTCACCTGGAAAGCGGAAGACGCCGGATGAGGGCGAAATTGTGGATACTCATCGGCAGGAATCTGCACCGAAGCGCCAAA ATGCTACGCGCACTTGCGTGCATGAGGTTGCAGTGCCCAGTGATTATACTTCGCTTAAAGATGGAACTGAATATGGGTCTCTTTCTAATCCTGTGTACAC TGGTGAGATGGCTAAAGCATACAAATTTGAACTTGATCCTTTTCAGAAGGTATCAATTGCCTGTTTGGAAAGAAAAGAGTCTGTTCTTGTTTCTGCACAT ACTTCTGCTGGGAAAACTGCCGTGGCTGAGTATGCAATCGCAATGGGCTTCAGAGATAAGCAGAGGGTTATATATACTTCTCCACTGAAAGCTTTGAGTA ACCAAAAGTATAGGGAGCTCCAGCATGAGTTTCAAGATGTTGGATTGATGACAGGTGATGTTACGCTGTCACCGAATGCTAGTTGCCTGGTGATGACAAC AGAGATTCTTAGGGGAATGCTCTACCGGGGATCACAAATTTTGAAGGAGGTTGCATGGGTTATTTTTGATGAGATCCATTATATGAAAGATCGTGAAAGA GGGGTTGTTTGGGAGGAGAGTATCATATTTTTGCCACCAGAGATTAAAATGGTTTTCCTTTCTGCCACAATGTCGAATGCCACAGAGTTTGCGGAGTGGA TTTGCAATGTGCACAAGCAGCCTTGTCATGTTGTGTATACTGATTTTCGGCCAACTCCTTTGCAGCATTATGTTTTCCCCATGGGTGGTTCCGGCCTATA CCTTGTTGTTGATGAGAATGAACAGTTCAGAGAAGATAATTTCATGAAGCTGCAAGACACGTTCTCAAAACAGAAAATTGGTGATGGAAACAAGAGTGCT AATGGTAAAGCAAGTGGTAGAATTGCAAAATCTGGAAAGGCCTCTGGAGGGTCGGACATTTTCAAAATTGTTAAGATGATTATGGAGCGGAAGTTTCAAA CTGTTATAGTTTTCAGCTTTAGTAGAAGAGAATGTGAACAGCACGCAATGTCCATGTCTAAGCTTGATTTTAATACACAAGAGGAGAAGGTTGTGGTAGA CGAAGTCTTCAATAATGCAATACAATGCTTGAATGAAGAAGATAGGAGTTTGCCAGCTATTGAATTGATGTTGCCACTACTTCAGCGTGGTATTGCTGTT CATCATTCCGGCCTTCTTCCTGTCATTAAGGAACTGGTTGAGCTTCTTTTTCAGGAAGGCCTTGTGAAGGCACTATTTGCGACAGAGACATTTGCCATGG GTTTGAACATGCCTGCCAAGACTGTTGTTTTTACAAATGTGAAGAAGTTTGATGGTGATAGTCATCGTTATATGGCATCTGGTGAATATATCCAGATGAG CGGAAGAGCTGGACGACGTGGCAAAGATGACCGCGGCATTTGTCTTTTAATGATCGATGATCAAATGGAGATGACCACACTCAAGGACATGATTTTGGGT AAACCAGCCCCTCTAGTTAGTACTTTTAGGCTGAGCTACTATTCCATTTTAAACTTATTGAGCCGTGCGGAAGGTCAGTTTACTGCAGAGCATGTGATCA AAAATTCATTCCACCAATTTCAGTATGAAAAGGCTTTACCAGATATAGGGAACAAGGTTTCAAAACTTGAACAAGAAGCTACGATCCTGGGTACAAAAGG AGATGACAAAGTTGCTGAGTATCATAAACTGAAGCTAGATATTGTTCAGCTTGAGAAAAAGATGATGACAGCAATCACAAGGCCTGAAAGAGTGCTTTAT TATTTATGCCCTGGCCGACTGGTCAGAGTCAGAGAAGGGGGAACAGATTGGGGCTGGGGAGTTGTAGTGAATGTTGTGAAGAAACCATCTATAGGGACAG GGATGCTGTCTTCACATGGTTGTGGCTATATAGTTGATACTTTACTTCATTGCACACCTGGATCTAATCAGAGTGTCTCGAGGTCCAAGCCTTGCCCTCC CCAGCCTGGAGAAAAGGGTGAGATGCATGTGGTACCTGTTGAGTTGCCTTTGATATCTGCTCTCAGTAAAGTAAGAATAACCATTCCATCTGATCTCCGT CCCTTGGAAGAAAGGCAAGGTATTCTTATAGCACTTGAAGAATTGGGATCTCGGTTTCCAGAAGGTCTTCCAAAACTTAATCCAGTAAAGGATATGAAAA TTGAAGATCCCGAAATTGTTGACTTGGTCAAGCGAATTGAAGAATTGGAAAGGACATTATATGCACATCCTGTGCACAAGTCTCAAGATGTGAATCAAAT TAGAAGTTTCCAAAAGAAGGCTGAGGTGGATCATGAAATTCAACAACTAAAGCTGAAAATGAAGGACTCTCAGCTGCAAAAGTTCCGTGATGAACTCAAG AACCGATCACGAGTTCTAAAAAGACTCGGTCATATAGATGGTGATGGTGTTGTTCAGCTAAAGGGCCGGGCAGCCTGTTTGATAGACACAGGAGATGAAC TTCTTGTAACAGAACTTATGTTCAACGGTACCTTTAATGAACTTGATCATCACCAAGTTGCAGCTCTTGCAAGCTGTTTCATTCCCGTGGACAAATCGAG TGAGCAAATACATTTAAGAAAAGAGCTTGCCAAACCATTGCAGCAACTACAAGAAAGCGCACGAAAAATAGCAGAGATACAATATGAGTGCAAATTGGAA ATAAATGTGGACGAGTATGTTGATTCAACCGTGAGGCCATTCTTGATGGACGTGATCTACTGTTGGTCAAAGGGAGCTAGCTTTGCAGAAGTTATACAAA TGACTGATATCTTCGAAGGTAGCATCATTAGGAGTGCCAGACGGTTGGACGAATTCTTGAACCAGTTACGTGCGGCTGCTCAGGCTGTTGGAGAAACCAG TTTGGAAGAGAAATTTGAAGCAGCGTGCAAAAGCCTTCAACGGGGAATTATGTTCGCCAACTCTCTGTATCTGTAA
AA sequence Show only first row Show all	>Lus10027599 pacid=23151263 polypeptide=Lus10027599 locus=Lus10027599.g ID=Lus10027599.BGIv1.0 annot-version=v1.0 MEEQSVASPGKRKTPDEGEIVDTHRQESAPKRQNATRTCVHEVAVPSDYTSLKDGTEYGSLSNPVYTGEMAKAYKFELDPFQKVSIACLERKESVLVSAH TSAGKTAVAEYAIAMGFRDKQRVIYTSPLKALSNQKYRELQHEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSQILKEVAWVIFDEIHYMKDRER GVVWEESIIFLPPEIKMVFLSATMSNATEFAEWICNVHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDTFSKQKIGDGNKSA NGKASGRIAKSGKASGGSDIFKIVKMIMERKFQTVIVFSFSRRECEQHAMSMSKLDFNTQEEKVVVDEVFNNAIQCLNEEDRSLPAIELMLPLLQRGIAV HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTNVKKFDGDSHRYMASGEYIQMSGRAGRRGKDDRGICLLMIDDQMEMTTLKDMILG KPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQYEKALPDIGNKVSKLEQEATILGTKGDDKVAEYHKLKLDIVQLEKKMMTAITRPERVLY YLCPGRLVRVREGGTDWGWGVVVNVVKKPSIGTGMLSSHGCGYIVDTLLHCTPGSNQSVSRSKPCPPQPGEKGEMHVVPVELPLISALSKVRITIPSDLR PLEERQGILIALEELGSRFPEGLPKLNPVKDMKIEDPEIVDLVKRIEELERTLYAHPVHKSQDVNQIRSFQKKAEVDHEIQQLKLKMKDSQLQKFRDELK NRSRVLKRLGHIDGDGVVQLKGRAACLIDTGDELLVTELMFNGTFNELDHHQVAALASCFIPVDKSSEQIHLRKELAKPLQQLQESARKIAEIQYECKLE INVDEYVDSTVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGETSLEEKFEAACKSLQRGIMFANSLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	0	1
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	1.7	0.9345
AT1G42440			unknown protein		Lus10013232 [exp]	1.7	0.9249
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	2.4	0.9293
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	4.5	0.9234
AT2G46200			unknown protein		Lus10000549 [exp]	4.9	0.9107
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	5.3	0.8809
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	5.5	0.9185
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	5.7	0.9034
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	7.1	0.8849
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	7.3	0.9045

Compare expression of checked genes

Lus10027599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.