Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 661 / 0 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 635 / 0 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 525 / 1e-170 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 513 / 4e-168 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 488 / 6e-157 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 384 / 4e-118 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 365 / 3e-113 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 333 / 2e-101 ARF ARF9 auxin response factor 9 (.1.2) AT5G60450 333 / 5e-100 ARF ARF4 auxin response factor 4 (.1) AT2G46530 327 / 1e-99 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022943 [exp] 1573 / 0 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033635 [exp] 601 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10010969 [exp] 526 / 1e-172 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 525 / 2e-172 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 523 / 1e-171 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 525 / 3e-171 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10007386 [exp] 517 / 5e-169 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 523 / 1e-168 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10024320 [exp] 506 / 2e-166 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145800 [exp] 1275 / 0 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 1231 / 0 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 647 / 0 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 614 / 0 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 532 / 1e-174 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 529 / 2e-172 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 525 / 3e-172 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.001G358500 [exp] 526 / 2e-171 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.005G236700 [exp] 525 / 1e-170 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.002G055000 [exp] 522 / 1e-169 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027600 pacid=23151239 polypeptide=Lus10027600 locus=Lus10027600.g ID=Lus10027600.BGIv1.0 annot-version=v1.0 ATGAAATCTCCCACAACTGCAAATCCAGCTGAAGAAGCAGAGAAAAAGACCATAAACGTTGAGCTATGGCAAGCTTGTGCCGGACCACTGGTGAACTTGC CCGCCGGCGGCACTCATGTGGTTTACTTCCCTCAGGGCCATAGTGAACAGGTTGCGGCATCTATGAAAAAGGATGTGGATGCTCAAATTCCAAACTACCC GAATCTTCCTTCCAAGCTACTATGCCTCCTTCACAATGTTACCTTGCATGCTGACCCGGAAACAGATGAAGTATATGCTCAGATGACCCTCCAACCGGTC CCTTCTTATGACAAGGAAGCATTACTGAGATCAGACCTCGCACTTAGATCAAATAAGCCACAGCCAGAGTTCTTCTGCAAGACATTAACAGCAAGTGATA CTAGCACTCATGGAGGCTTTTCTGTTCCTCGTCGAGCAGCTGAGAAGATTTTCCCACCCCTTGATTTCTCCATGCAACCGCCTGCTCAAGAACTTGTTGC CAGGGATTTACATGATAATGTTTGGACTTTCAGACATATCTACCGTGGACAGCCAAAGCGTCACTTACTTACGACAGGCTGGAGCCTTTTTGTTAGTGGG AAAAGGCTTATTGCTGGTGACTCGGTCTTGTTCATCAGAGATGAAAAGCAGCAGCTTCTTTTGGGCATAAGACGGGCTAATCGGCAGCCTACCAATTTGT CTTCATCAGTTTTATCAAGTGATAGTATGCACATCGGCATCCTTGCTGCTGCAGCACATGCGGCAGCTAACAATAGCCCCTTTACTGTGTTCTTCAACCC AAGGGCTAGCCCGTCAGAATTTGTAGTTCCATTAGCCAAATACTACAAAGCTGTCTATAGCAACCAAGTTTCACTCGGTATGCGATTCCGGATGATGTTT GAGACTGAGGAGTCAGGAACAAGAAGGTATATGGGTACGATTACTGGGATTACCGATCTTGATCCTGTGAGATGGAAGGGTTCTCAATGGCGTAACTTAC AGGTTGGATGGGACGAATCAACTGCAGAGGAAAGGCGGAATCGTGTTTCGGTTTGGGAGATTGAACCAGTGACTGCTCCATTTTTCATATGTCCCCCTCC TTTCTTTAGATCTAAGCGTCCAAGACAACCAGGAATGACAGATGATGACTCTTCTGATTTAGATAGAATATTAAAGAGGAGTATGCCATGGCTTGGCGAT GATATCTTGAAGGATCCTGGGAGCCTCCCTGGATTAAGCTTAGTTCAATGGATGAACATGCAACAAAACTCATCACTGGCAAAAACAGTGCAGCAAACTT ACATGCAATCTTTGCCAGGGCCCGGTCTTCCAAATCTCGCCGGTACAGGTGACAGTTCCCGCCAGCTAGGCGGCTTGTCAGCACCTCAAATTCTTCAACA AAACAACTTTCAGTTGACTGCTCCACAGCTACCTCAGCAAGCTCCGCAGCTTGATCAGTTCATCAAAATGCCGTCCTCGATGAACCCAATGGCATCCGTC GTCCAAGTGCCTGATGGTATTGAACAGCCAAGACAAAAATTGATGAGCCAAACTCCATCCACAAGTCAAGTTCAAGCCAGTAGCATTGTACAGCATCAGC AACCTAATCAAAGTAATCAGTTTGTAAGAAACCTTTCTCCTAGCCTACAACAGCAGCATAGTCAAACTCAAATGCAAAACTTCGTGTCAACCCAGATACC AGATCAACTTAATCAGCATTTTCAAGGATCGGATAATCATCTTCAAATTCAGCTGTTGCAAAAGCTTCAGCAGCAGCAACAGCAGTCACTGTTAGCTCAG CAGGCGGTGGGGCAACTTTCTCAACTACAAGAACCACAACGGCAACAATTAGATGCATCGCAAAGCTTCTCCAGGTCCGTGACACCCAACCAAATGCCTC AAACAGTGACCTCCTCACTCCCACAGTCGAATATCGTTCAGCAACAGATTGCCAAGGGCAACAACAACCAAGTTGATGTCCGATTTTCTCATCTGCCACA ACAAAGTCAGAAACTTCAAGACCAACAAACTAGCTTACTACCAGAAGTCCCCGGGCATATCAGAGTACCTCCTTGCACAACAAGTAATCAGCTTTCAACA GGCATGTTGAACGCAAGAGCAGTGACTGACGAAGTACCATCTTGCTCTACTTCACCTTCAACAAACAACTGCTCGAATCTGATTCAACCAATGATGAATG ACATTTATCCATCTACTGGCACACTCTTGAGTCCTGGTGCACTGGACACAATGCCCTATGCCGGGGGCATGTTTAAAAACATGCAACAGAAATCGGATGT TAAGCCTTCCCTTAACATCTCCAAGAATCAAAACCAGGGATTTTTTAGTGTGAAAGGACCAACTGCCCAAACTGATTATTTGGACACTTCATCTTCTACA TCAGCATGTCTTTCCCAAAATGATGTACAGTTGCAGCAAAATAACGTGTCGTATAATTCACAACCTATACTGATGAGAGGAGAAACTAACCAAGATGGAG GAGAGCTCCAAGCGGATCTTAGGAGTAATGGTGTCTATGGAACTGGTATTGACGGCCAAAACCAACTGGGGATACACATGCACTCTGATGATTTGTTGAC AAAGTCCATGGTAGGAGTGCTGGGGAAAGATTTCTCAAACAACCTTCCTTCCGGGGAGATGCTTGCTAACTGTGCCAATTCAAACTCGAAAAAGCCTCAG CAAGAACTCTCGTCATCGATTGTGTCTCAGTCGTTTGGAGTTCCCGATATGGCTTTCAACTCCATTGACTCCTCAATTAATGATAGCAGCTTCTTGAACA GAAGCTCCTGGGGCGCTCAACCACAGTTTCAGCGAATGAGGACTTATACTAAGGTGTATAAACGTGGAGCTGTGGGGAGGTCGATTGATATAACCCGTTA TTCAGGTTATGATGAGCTTAAGCAAGATCTAGCTCGTCGGTTTGGCATAGAGGGTCAGCTGGAAGATCGAGGGAGAGTAGGGTGGAAACTTGTTTATGTC GATCATGAGAATGATGTGTTGCTAGTAGGGGATGATCCTTGGGAAGAATTTGTGAATTGCGTGCGGTGCATCAAGATACTGTCGCCCCAAGAAGTGCAGC AGATGAGTTTGGATGGAGATTTTGGCAACTCTGTGCTTCCAAATCAAGCCTGTAGCAGCTCAGATAATGGCAATACCTGA
AA sequence Show only first row Show all	>Lus10027600 pacid=23151239 polypeptide=Lus10027600 locus=Lus10027600.g ID=Lus10027600.BGIv1.0 annot-version=v1.0 MKSPTTANPAEEAEKKTINVELWQACAGPLVNLPAGGTHVVYFPQGHSEQVAASMKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPV PSYDKEALLRSDLALRSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSG KRLIAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFFNPRASPSEFVVPLAKYYKAVYSNQVSLGMRFRMMF ETEESGTRRYMGTITGITDLDPVRWKGSQWRNLQVGWDESTAEERRNRVSVWEIEPVTAPFFICPPPFFRSKRPRQPGMTDDDSSDLDRILKRSMPWLGD DILKDPGSLPGLSLVQWMNMQQNSSLAKTVQQTYMQSLPGPGLPNLAGTGDSSRQLGGLSAPQILQQNNFQLTAPQLPQQAPQLDQFIKMPSSMNPMASV VQVPDGIEQPRQKLMSQTPSTSQVQASSIVQHQQPNQSNQFVRNLSPSLQQQHSQTQMQNFVSTQIPDQLNQHFQGSDNHLQIQLLQKLQQQQQQSLLAQ QAVGQLSQLQEPQRQQLDASQSFSRSVTPNQMPQTVTSSLPQSNIVQQQIAKGNNNQVDVRFSHLPQQSQKLQDQQTSLLPEVPGHIRVPPCTTSNQLST GMLNARAVTDEVPSCSTSPSTNNCSNLIQPMMNDIYPSTGTLLSPGALDTMPYAGGMFKNMQQKSDVKPSLNISKNQNQGFFSVKGPTAQTDYLDTSSST SACLSQNDVQLQQNNVSYNSQPILMRGETNQDGGELQADLRSNGVYGTGIDGQNQLGIHMHSDDLLTKSMVGVLGKDFSNNLPSGEMLANCANSNSKKPQ QELSSSIVSQSFGVPDMAFNSIDSSINDSSFLNRSSWGAQPQFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRGRVGWKLVYV DHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNSVLPNQACSSSDNGNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	0	1
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	1.0	0.9513
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	3.7	0.9081
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	3.9	0.9302
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	5.3	0.9281
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	5.3	0.9316
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	6.3	0.9213
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	7.1	0.9247
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	9.2	0.9053
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	9.2	0.8918
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	9.5	0.9229

Compare expression of checked genes

Lus10027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.