Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008000 [exp] 80 / 1e-18 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10001874 [exp] 59 / 1e-10 ND / Lus10036316 [exp] 56 / 1e-09 ND 42 / 4e-04 Lus10005734 [exp] 55 / 3e-09 ND / Lus10039431 [exp] 53 / 7e-09 ND / Lus10006649 [exp] 49 / 1e-07 ND / Lus10000784 [exp] 48 / 3e-07 ND / Lus10021744 [exp] 46 / 2e-06 ND / Lus10012674 [exp] 44 / 6e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027602 pacid=23151205 polypeptide=Lus10027602 locus=Lus10027602.g ID=Lus10027602.BGIv1.0 annot-version=v1.0 ATGGAGGGTTCGACCTTTTCCAATGAAAACGTCGGACTCGATTACAATGGTCGCCAAAATAAGCGGGTGAAGATGAGAAGAACACTGGTGTTTGACGTAC CGATTCGGGTTTTCCGATCCATGATGCAGATCCCCGTTGACGTGGTCTGCCGTTCCATATGCTACCGCCAACCTATAATGGCCGGCGATTCGAAGTTTGG AGGTCAAACTCCAACTATGGCGTTCTCAGGTCATTCTGGTGCATACACCAAGGGGAAGCCCTCACATTTTGGTGGAGGAGAACTAGAAGAGGATGTAGCT GACAACGAGGCTGAGAATGTACCACCAATTGACGATGAGGAATCGAGTGATGATGATGATGGTGCCCATATCGGGGCGATGGAGCCAGAGGGAGAAGATG TTGATGTCCCATTGGGAGGAGTCCAAGCATCATTGTCTCAGGCCCCTACCCGAGAGTACACTCCGTCGGGGTTGTACACTAATATGAGGGAGGACATTGA CATGGCAATATCTGTGGACCAGTAA
AA sequence Show only first row Show all	>Lus10027602 pacid=23151205 polypeptide=Lus10027602 locus=Lus10027602.g ID=Lus10027602.BGIv1.0 annot-version=v1.0 MEGSTFSNENVGLDYNGRQNKRVKMRRTLVFDVPIRVFRSMMQIPVDVVCRSICYRQPIMAGDSKFGGQTPTMAFSGHSGAYTKGKPSHFGGGELEEDVA DNEAENVPPIDDEESSDDDDGAHIGAMEPEGEDVDVPLGGVQASLSQAPTREYTPSGLYTNMREDIDMAISVDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027602 [exp]	0	1
					Lus10000363 [exp]	3.5	1.0000
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	4.7	1.0000
					Lus10004996 [exp]	4.9	1.0000
					Lus10003285 [exp]	6.0	1.0000
					Lus10025781 [exp]	7.1	1.0000
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	7.9	0.9473
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	8.1	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	8.8	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	10.2	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	12.0	1.0000

Compare expression of checked genes

Lus10027602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.