Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38670 507 / 7e-179 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1) AT2G32260 111 / 4e-27 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 108 / 3e-26 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022942 [exp] 724 / 0 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 626 / 0 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10021592 [exp] 619 / 0 AT2G38670 505 / 4e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10010471 [exp] 111 / 7e-27 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 110 / 8e-27 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 110 / 8e-27 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 107 / 4e-26 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 106 / 1e-25 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 74 / 7e-15 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132700 [exp] 613 / 0 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 607 / 0 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 488 / 2e-171 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 483 / 3e-169 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.001G159400 [exp] 115 / 9e-29 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 114 / 3e-28 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 108 / 4e-26 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 107 / 1e-25 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10027604 pacid=23151287 polypeptide=Lus10027604 locus=Lus10027604.g ID=Lus10027604.BGIv1.0 annot-version=v1.0 ATGAACTGGGTGATGATTCAAGTTTTTCAACATTTCCAGGGGTTTAATGTTCTTCCCTCATCTCTGATGTTGCAGGTTCCAGCTGCGTCCTCTTGTTTCC CGGCGACACAGCAAGGGCGGCGGGTTGTGGGAATGGATTACGGGAGCAGTAATTGGATCTGGGATGGGGTTTACTGCCACCCGCATCTGTTCGGTGGTTT AATGCTTACCGCTACCTTGCTTGGTTTGTCCACCAGCTATTTCAGCGGAATTGGACTCTCTTTTTTCCCCTACACGTTCTCCGATCTGGGTAAGAAGAGG CCGGACAAGAAGAAGCGGGTTCGGGTCTACATGGATGGTTGCTTTGATCTCATGCATTTTGGTCATGCCAATGCTTTGAGGCAAGCTAAGGCTTTGGGGG ATGAGTTGGTGGTTGGAGTTGTCAGCGATGAGGAGATCATTCTCAATAAGGGCCCCCCTGTTTTGCCCATGGAGGAGAGGTTGGCCCTTGTGAGCGGATT GAAGTGGGTTGATGAAGTCATTGCTGATGCTCCTTATGCTATTACGGAGCAGTTCATGAAGAGTCTCTTCAATGAGCATAGGATTGACTATATCATACAT GGTGACGATCCTTGCCTCCTCCCTGATGGAACCGATGCTTATGCCTTAGCCAAGAAAGCTGGCCGTTACAAGCAAATTAAACGAACTGAAGGCGTTTCCA GCACTGATATCGTTGGAAGAATACTTTGCACTGCAAAGGATGACGATGTTGAAGACCACCGTGATATTTCATCGTCTTCACCTGGTGATAAAGGAATTCG ATCTCATAGTTCCCATTTATCTCAATTTCTACCAACCTCTAGACGGATAGTGCAGTTTTCAAATGGCAAGGCACCTGGACCTAATGCCCGCGTTGTCTAC ATTGATGGAGCATTTGACCTGTTCCATGCAGGGCATGTTGAGATTCTAAGAAAAGCAAGGCAGCTTGGTGACTTTCTACTAGTTGGGATCCATATGGATC ATATCGTTAGGGAACACAGAGGGAAATACTATCCAATAATGCAGTTGCATGAACGTAGTCTTAGTGTGCTCGCATGTCGCTATGTTGATGAAGTCATCAT TGGTGCACCCTGGGAAGTTTCCAAGGATGTGATTACAACTTTCAACATATCAGTGGTTGTGCGTGGGACTGTTGCAGAGCATAACTCTTTATTATCAGCT GAAGAAAGTGATCCTTATGAAGTCCCAAAAGCCATGGGGATCTTCAGGACTCTGGACAGCCCTAAAGATGTAACAACCACATCAGTGATGAAACGAATCA TCGCTAACCACGAGGCCTACAAAAAACGAAATGCAAAGAAGAGTCAGAGTGAGAAGAAATACTATGAGGAGAAGGTATATGTTTCTGGAGACTAA
AA sequence Show only first row Show all	>Lus10027604 pacid=23151287 polypeptide=Lus10027604 locus=Lus10027604.g ID=Lus10027604.BGIv1.0 annot-version=v1.0 MNWVMIQVFQHFQGFNVLPSSLMLQVPAASSCFPATQQGRRVVGMDYGSSNWIWDGVYCHPHLFGGLMLTATLLGLSTSYFSGIGLSFFPYTFSDLGKKR PDKKKRVRVYMDGCFDLMHFGHANALRQAKALGDELVVGVVSDEEIILNKGPPVLPMEERLALVSGLKWVDEVIADAPYAITEQFMKSLFNEHRIDYIIH GDDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRILCTAKDDDVEDHRDISSSSPGDKGIRSHSSHLSQFLPTSRRIVQFSNGKAPGPNARVVY IDGAFDLFHAGHVEILRKARQLGDFLLVGIHMDHIVREHRGKYYPIMQLHERSLSVLACRYVDEVIIGAPWEVSKDVITTFNISVVVRGTVAEHNSLLSA EESDPYEVPKAMGIFRTLDSPKDVTTTSVMKRIIANHEAYKKRNAKKSQSEKKYYEEKVYVSGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10027604 [exp]	0	1
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	7.4	0.8069
AT5G03330			Cysteine proteinases superfami...		Lus10001404 [exp]	8.7	0.7207
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	9.5	0.7638
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	15.9	0.7859
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	18.1	0.7958
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	19.0	0.7139
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	22.6	0.7956
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	23.2	0.7833
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	25.3	0.7852
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10036182 [exp]	29.0	0.7733

Compare expression of checked genes

Lus10027604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.