Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03910 241 / 1e-76 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021530 [exp] 324 / 2e-115 AT1G03910 253 / 2e-81 unknown protein Lus10027730 [exp] 248 / 6e-85 ND 328 / 7e-110 Lus10030000 [exp] 256 / 3e-83 AT1G03910 713 / 0.0 unknown protein Lus10027731 [exp] 255 / 4e-82 AT1G03910 875 / 0.0 unknown protein Lus10035558 [exp] 252 / 7e-81 AT1G03910 870 / 0.0 unknown protein Lus10035559 [exp] 228 / 2e-77 ND 301 / 4e-100 Lus10035324 [exp] 102 / 6e-29 AT1G03910 116 / 4e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118700 [exp] 246 / 2e-78 AT1G03910 849 / 0.0 unknown protein Potri.001G242900 [exp] 190 / 2e-59 AT1G03910 250 / 1e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09732 [flax] [poplar] CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence Show only first row Show all	>Lus10027605 pacid=23151199 polypeptide=Lus10027605 locus=Lus10027605.g ID=Lus10027605.BGIv1.0 annot-version=v1.0 ATGGCAGCAAACCCACCAGCGGAGGACAACTTTGAGATGATGGCCAACGAAGCCATGGGAGTGATGGAGGAAGGCGATGTGGAGTTTGCGTCGTCGGGAG ATGAAGCGAATCTGGACTCTGCAGTTGACGACAAGAACAGACCGAGGAAACCAAAGTTCTTGATCCGAGTCCACACTGGTTACGAGTGGAACAAGTACAA CCAGATCCACTACGATCATGATAACCCGCCACCAAGGATCGTTCAAGGATACAAGTTCAATATCTTCTACCCGGACCTCATTGACAAGACCAAGACTCCG ACATACACGATTGATAAAGACGATGAGAGCAGGAACGATGAGATGTGCATCATCAGGTTCCATGCGGGACTGCCTTACGAGGACCTTGCTTTCCAGATTG TGAACAAGGAGTGCGACTACTCTGACAAGAAGGGGTTCAAGTGCACGCTCGAGAGCGGGATTATGCATCTCTACTTCAACTTCAAACGCCCCCATCGCTA TTGCCGGTGA
AA sequence Show only first row Show all	>Lus10027605 pacid=23151199 polypeptide=Lus10027605 locus=Lus10027605.g ID=Lus10027605.BGIv1.0 annot-version=v1.0 MAANPPAEDNFEMMANEAMGVMEEGDVEFASSGDEANLDSAVDDKNRPRKPKFLIRVHTGYEWNKYNQIHYDHDNPPPRIVQGYKFNIFYPDLIDKTKTP TYTIDKDDESRNDEMCIIRFHAGLPYEDLAFQIVNKECDYSDKKGFKCTLESGIMHLYFNFKRPHRYCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03910			unknown protein		Lus10027605 [exp]	0	1
AT2G42310			unknown protein		Lus10042351 [exp]	2.4	0.8455
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	10.6	0.8367
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	10.7	0.8469
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	10.9	0.8367
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	11.1	0.8542
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10000585 [exp]	12.4	0.8407
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	13.4	0.8308
AT5G43490			unknown protein		Lus10002352 [exp]	15.4	0.8309
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	16.5	0.8131
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	17.0	0.8326

Compare expression of checked genes

Lus10027605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.