Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007389 [exp] 88 / 7e-24 AT3G13940 56 / 8e-11 DNA binding;DNA-directed RNA polymerases (.1) Lus10029818 [exp] 92 / 6e-23 AT3G13940 327 / 4e-108 DNA binding;DNA-directed RNA polymerases (.1) Lus10020738 [exp] 91 / 1e-22 AT3G13940 319 / 1e-105 DNA binding;DNA-directed RNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198600 [exp] 48 / 2e-07 AT3G13940 328 / 4e-108 DNA binding;DNA-directed RNA polymerases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027606 pacid=23151252 polypeptide=Lus10027606 locus=Lus10027606.g ID=Lus10027606.BGIv1.0 annot-version=v1.0 ATGGAACCGGTTCTTCGAGGACGTGCCAATACTGCTAACGAGGACGCTTCAAAAGAAGATGGTGAGCTTCCTGCAAAACAGCAGCAGATAGCCGAGAAGA GAAGACTTCTTGATCAATGTTCAACAAAGCAGTCTGTAGCAAGGGATGACTTTGAGAGGGATACTCTGGCTGGAATTCTTTGCTACATAACGCATCTGGT GAAGTTCATGGCCTTGCAATACATGGATACTGCAGCAGCTGCGAGAAATCACAGATTCCCACACTACTTAAGGATAAGTTTCAGGAGATGTTCAATTCGG AGGGGGAGACGAGAAGAATGCCAACTGAGTTTCTCAGAACTATACAAAAAGAACTGA
AA sequence Show only first row Show all	>Lus10027606 pacid=23151252 polypeptide=Lus10027606 locus=Lus10027606.g ID=Lus10027606.BGIv1.0 annot-version=v1.0 MEPVLRGRANTANEDASKEDGELPAKQQQIAEKRRLLDQCSTKQSVARDDFERDTLAGILCYITHLVKFMALQYMDTAAAARNHRFPHYLRISFRRCSIR RGRREECQLSFSELYKKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027606 [exp]	0	1
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	1.0	0.9981
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	2.4	0.9842
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	3.0	0.9842
AT1G70780			unknown protein		Lus10039287 [exp]	3.5	0.9842
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	5.0	0.9121
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	5.3	0.8911
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	5.5	0.9083
AT5G24130			unknown protein		Lus10001061 [exp]	6.3	0.8694
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	6.9	0.8184
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	7.1	0.8401

Compare expression of checked genes

Lus10027606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.