Plant FIBer expression Database

Lus10027608 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35320 67 / 2e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011963
[exp]
387 / 3e-139 AT5G35320 69 / 4e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G132600
[exp]
93 / 1e-22 AT5G35320 77 / 2e-16 unknown protein
Potri.006G070900
[exp]
89 / 3e-21 AT5G35320 89 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10027608 pacid=23151260 polypeptide=Lus10027608 locus=Lus10027608.g ID=Lus10027608.BGIv1.0 annot-version=v1.0
ATGGCAAGGGAAGGTAGATTCAAGAGGAAGGATCTCGATATGGATTTTGTCTCCGATGATTTCTCCCTCTCTCCTGCTCTGAAGATTCGCCGCTTGGTAA
TGGAGGATACGGAGTCTTTGCTCCCAATGATGGGTGAAGAGGACGGGAATGCTGCTCCTGTGCCTGTAGTGGAGATGGACGAATCAGTTCCTTCGCCGCA
GTCTGAGAACCTGGAGAGGGCTTTGGTGTTGTTCAGGCCGATCAACATTTGCACTCAATCCAATTACTCCGTGGCTCTAGATTCCCAACTTCTCTACAGT
CTTAAGAGAGACCAACTCCTCAGTGGTGGCCAGCCATTTGAGATGATCCAGTCGGCTGAGAATAAGATTAGCGATGGTGATGAACGCGATGGATGCAAGG
CTGTTGTACCATGGGTTTCTCGGCAGCGTTTCCAGTCGGAAGGATCACAGGACTTGATGGAACAAGATGAAGGAGGTGTAGTATCAATGGATGTTGAGGA
CAGCGAAGGTAATGGGAATACAGAGCAAATGTGCCAGTTCTACAAGACGAGTTTGCCTCAATTGCAGCAGCACTGCTTGATTCCGGAGCTCCCTCGGAGT
AATCCGACTCCAGTGATCTGGTTGAGATAA
AA sequence
>Lus10027608 pacid=23151260 polypeptide=Lus10027608 locus=Lus10027608.g ID=Lus10027608.BGIv1.0 annot-version=v1.0
MAREGRFKRKDLDMDFVSDDFSLSPALKIRRLVMEDTESLLPMMGEEDGNAAPVPVVEMDESVPSPQSENLERALVLFRPINICTQSNYSVALDSQLLYS
LKRDQLLSGGQPFEMIQSAENKISDGDERDGCKAVVPWVSRQRFQSEGSQDLMEQDEGGVVSMDVEDSEGNGNTEQMCQFYKTSLPQLQQHCLIPELPRS
NPTPVIWLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G35320 unknown protein Lus10027608
[exp]
0 1
AT3G09350 Fes1A Fes1A (.1.2.3) Lus10003961
[exp]
1.7 0.9176
AT5G37670 HSP15.7CI HSP20-like chaperones superfam... Lus10004039
[exp]
3.2 0.8868
AT1G03070 Bax inhibitor-1 family protein... Lus10042631
[exp]
4.9 0.8459
AT1G16030 HSP70B heat shock protein 70B (.1) Lus10041615
[exp]
5.9 0.8692
AT3G44110 ATJ3 DNAJ homologue 3 (.1.2) Lus10013364
[exp]
6.0 0.8817
AT5G07330 unknown protein Lus10042036
[exp]
6.0 0.8855
AT3G08970 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1... Lus10002852
[exp]
7.5 0.8230
AT5G03340 ATPase, AAA-type, CDC48 protei... Lus10023018
[exp]
8.7 0.8287
AT3G07090 PPPDE putative thiol peptidase... Lus10025931
[exp]
12.0 0.8372
AT2G26150 HSF ATHSFA2 heat shock transcription facto... Lus10013797
[exp]
13.6 0.7817

Lus10027608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.