Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20600 269 / 7e-83 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011961 [exp] 504 / 1e-173 AT5G20600 459 / 1e-156 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036500 [exp] 298 / 2e-93 AT5G20600 455 / 2e-155 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05997 [flax] [poplar] Nop52 Nucleolar protein,Nop52
Representative CDS sequence Show only first row Show all	>Lus10027609 pacid=23151318 polypeptide=Lus10027609 locus=Lus10027609.g ID=Lus10027609.BGIv1.0 annot-version=v1.0 ATGGTCGAAACTCAACTTCAATTAGGGCCGTCGCTGATTAAGCAGCTCGGCGCCTCCGACAACAAGACGCGCAGCAGATCTCTCCGCTCCGTTCTGTCCT CATGGCTTCCTTCGCAATCCACTCTCTCCGACGACGATATGAAGAAGCTCTGGAAGGGACTCTTTTACTGCTTCTGGCACTCCGACAAGCTCCCCGCCCA AACACACCTCATCGACCGCCTCAGCTCATTGCTTCCGGTCCTCGATTTGCCTCTATCAGCTCACTACTTCTCCGTCTTCCTCCTCACCATGCGCCGCGAG TGGCCAGGAATCGATTTCCTCAGGTTGGACAAGTTCTACCTCTTGATTCGTAGGTTTTTCCGCTCGCTTTTCCTTTTGTTGAAGAAGAATTCGTGGAATT TGGAACTCTCCAATCAATTCATGGGCATTGTTTTGGAGAGGGCTTTCTTGGCTGATGATAAGTTCCAGGGGAACGGCGTTAACTATCATATTGCCTCTGT TTTCCTCGAAGAGCTCAAACCTTTTCTCCCCCTGAGTAAGCAGGTTGTCCAGGCTCTTGTGTTGCCTTTGGTGTCTGTGATGGGAAAGGCAGTTGATAAG GTGCTGCTTGGTAAACTTAAGGGCAATGTTTTCGGCGAGTTGTTGAAAGCGGGAAGAGCATTGCTGGAGTTGAAGAAATTAGGGTTAGATGGTGATTCTG AGAATAAAGATGTGGTGTTTCTCGGTACAATTGCCTTAGCTATGGGATTTTCCGCTATATTCTATGAAATTGGTTCCTCTGCCGATTGTCCTCAAGGTAA CAGGAAAGTTCTCCTTGGTCTACACGAGGAGTTCTTGCAGCTGGAGAAGGCATTGGCTCTTTCAGGAATCGAAGTTTCCCTTCCCGGAGTTAATAATGGG AGTACTGATGATGATGAAGTGCCCACTTTAGTGCCAATCATGGACGTGGAAGGTCGAAATGGTGATGCTAGCAATGGCTTTGGTGAAAAGAAATCTAAGA AGAACAAAAAGAGGAAGAAAGATTCATCTGACAATGATGGAAAAGATAAGGAGGAGGAAAAGAAGAACAAGAAGGAGGAAAAGAAGAACAAGAAGGAGGA GAAGAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAGAAAATGGTGGAATGGATGGGGAGAATGCAAATGGTGTAGTTGAAAACGGTGAGAACTCA AGCAAGGAAAAGGGAAGTGATGTGATGACATTCGATGATGCTGTTATAGCAAACCTCCAAATGCAGTTTGAGAAAGTTGCAGCTGAAGTCGGTATGGATA ACGATGCTGGAAGCCCTTTCGAGCTCGGTGAAGTGAAAGGCAATGGTCATTTACCCAAGAAGAGGAAGAGATCCAAAAGTAAGAAAGCTGTGAAGCAGCA GTCTGATAATCACGAATCAACAGATCAGGGGGAGGAGGATGCTGCTGTTGGTGCTGAAACTGGAAAGAGTGGGGACAAAAGTGCTGCAAAGAAGGTTCGG TTTGCAATGAAGAACAACTTGGTATGGAAGCCACACAATCCTCTACCTCCAGAGAGTCTGAGAATACCACCTTCTGTTACCCCTAGAGGGAGTGCTCTGA AGAAAGGATTATCTCCTGGTCCAATCAGGGAGATTCGTAGTTCGGGAGCTAACAAGGCTAGAAAAAGAGCAAAGTCCCTGAAAGGGAGAAGAGGAGTTGT CCCTCCTACTATCAGACGCATGAAGAAGTCCAACTCTCTCTGA
AA sequence Show only first row Show all	>Lus10027609 pacid=23151318 polypeptide=Lus10027609 locus=Lus10027609.g ID=Lus10027609.BGIv1.0 annot-version=v1.0 MVETQLQLGPSLIKQLGASDNKTRSRSLRSVLSSWLPSQSTLSDDDMKKLWKGLFYCFWHSDKLPAQTHLIDRLSSLLPVLDLPLSAHYFSVFLLTMRRE WPGIDFLRLDKFYLLIRRFFRSLFLLLKKNSWNLELSNQFMGIVLERAFLADDKFQGNGVNYHIASVFLEELKPFLPLSKQVVQALVLPLVSVMGKAVDK VLLGKLKGNVFGELLKAGRALLELKKLGLDGDSENKDVVFLGTIALAMGFSAIFYEIGSSADCPQGNRKVLLGLHEEFLQLEKALALSGIEVSLPGVNNG STDDDEVPTLVPIMDVEGRNGDASNGFGEKKSKKNKKRKKDSSDNDGKDKEEEKKNKKEEKKNKKEEKKNKKKKKKKKKQENGGMDGENANGVVENGENS SKEKGSDVMTFDDAVIANLQMQFEKVAAEVGMDNDAGSPFELGEVKGNGHLPKKRKRSKSKKAVKQQSDNHESTDQGEEDAAVGAETGKSGDKSAAKKVR FAMKNNLVWKPHNPLPPESLRIPPSVTPRGSALKKGLSPGPIREIRSSGANKARKRAKSLKGRRGVVPPTIRRMKKSNSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20600			unknown protein		Lus10027609 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	1.0	0.9671
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	2.0	0.9644
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	3.0	0.9606
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	5.3	0.9548
AT3G53630			unknown protein		Lus10023752 [exp]	5.5	0.9478
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	6.0	0.9449
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	6.0	0.9509
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	7.1	0.9504
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10019147 [exp]	7.2	0.9485
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	9.0	0.9378

Compare expression of checked genes

Lus10027609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.