Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29750 634 / 0 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 508 / 1e-167 ATCFM3A CRM family member 3A (.1) AT4G14510 497 / 6e-163 ATCFM3B CRM family member 3B (.1) AT3G18390 450 / 1e-145 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 431 / 2e-136 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G16180 308 / 2e-93 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G25440 108 / 5e-25 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 102 / 3e-23 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 86 / 1e-17 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 82 / 6e-16 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022091 [exp] 516 / 1e-168 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 508 / 4e-162 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10009031 [exp] 421 / 9e-135 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 420 / 4e-134 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 399 / 6e-125 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10033576 [exp] 342 / 2e-106 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10039451 [exp] 193 / 1e-53 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10017618 [exp] 146 / 1e-37 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009566 [exp] 111 / 8e-26 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077100 [exp] 531 / 3e-176 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.012G056100 [exp] 450 / 4e-146 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 422 / 6e-133 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 334 / 2e-108 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 349 / 6e-108 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.014G176900 [exp] 107 / 2e-24 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.007G129600 [exp] 99 / 1e-21 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.013G083000 [exp] 91 / 3e-19 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 79 / 5e-15 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 66 / 1e-10 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10027610 pacid=23151261 polypeptide=Lus10027610 locus=Lus10027610.g ID=Lus10027610.BGIv1.0 annot-version=v1.0 ATGTCGCTCCATCTTCACCCAATGAATCTTCTTCTGCCTCAAACCCGAACTTGGGAATTCAGGACTTCCTCACCTCGCGTAATTCGAGTCTATAATACAG CCGAGACCAGGAGAAGGCCTAGGCCGAGCTTTTTGGAGGAGGTTCAACAGAAATGGTCACGAAAGCAGTTGTCGACCAGAGAGCATTTTCCCTGGCAGCA GCAGCAGCAGAAGCAACGAAACGAAATCAAGGAGGAAGAAGAAAATGCGATAGATGTAGACATAGTGAGGAATCGTTCTGGCTCAGACGAGTTGGAGCCG CCTGGAATCGGGGGAGAGCCTTCAACGAGTTTCCCCTTACGGAATCGCTCGAGTTCGGCCCCGTGGGTGCAAGGAGATAGAGCTCGACATTCCCGTTCAA TCAATTTGGCTGATAATCATATTGTGAATGGTGCTATTGATGACGAGGCAGAAAGTGCGGAAATGAAGGCAAATAATTCTCGCCAAACAAGTGAATGCAA TGTAGCGAAATTGGAAGCGCTGAAAGAGACTAGCAGCAGCAGAAGCTCAGTTGAGTCTCCATGGAATATTGGATTGAAGATGAAAAATGAGATGCTGAAG GTGAGTAAGAGTAACACTGAGATAGCGGAGAGGACGCTGCCGGGACATGAGTTGAAGAGGCTAAGGAACGTGGCACTGAGGATATCTGAGAGGATCAAAG TTGGGGCTTCTGGTGTTAATCAGAGTTTGGTGGACGCCATTCATGAGAAATGGACACTTGATGAAGTGGTTAAGTTGAAGTTTGAAGGCCCTCCTTCTCG CAACATGAAGAGGATACATGAAATCTTAGAGAGTAGAACTGGAGGCTTGGTGATATGGAGGTCTGGGACTTCAGTGGTGATATTTAGAGGAATGACATAC ATGTTGCGATGTGTTCGATCATACACGAAGCAGAAAGAGGCTGCTATTGTAGATGATGCTACTGCTAACAAAGGAACTGAAGATGTTTTCAGAACCACCC TGGAGTCTACTATACGAAATCCCCCAAAGCATCATTTCAACAGTCTGTCAGAGACCGAACTTGTGGACCTCTCTGAACTGAACAATCTGTTAGATTCCTT GGGACGGAGGTTCCAAGACTGGGGTGGCCCTGAGCCATTGCCTGTTGATGCAGACTTGCTTCCTGCTGTTGTCCCAGGTTATAAGCCACCTTTCAGGCTT CTTCCTTATGGGGTAAAACATTGTTTACGAGACAAGGAGACGACCAAGTTTCGTAGGCTTGCAAGAACAACGCCTCCACACTTTGCCTTAGGCAGGAGCA GAGACCTGCAAGGTCTGGCCAAGGCTATTGTGAAGCTATGGGAACAAAGTGCTATTGCGAAGATTGCTATCAAACGCGGTGTTGAGAACACTCGGAATGA GAGAATGGCAGAGGAGCTTAAGGTGAGCGAAATGGACGAGCATCCAAGCTGCTTGTCATGTGATAGGCTAATGGATGTTTCGGTCGCCCTCATTTTAATA GTGGTGCACTTGCTGTTTCTTTCTGTGCAGAGATTAACTGGAGGAACGCTACTCTCCAGAAACAAGGAGTATATTGTATTTTACAGGGGCAACGACTTCT TGCCGCCAGCAGTTATGAAGACATTGAAGGAGAGACAGAAGCTAAATTTGCTCCAGCATGTTGAAGAAGAGCAGGTGCGGAAGATGGCTCCATCGAACAT CAGAACAACTGAACTCCCGGCAGTTGCTGGAACGCTTGCTGAAACTATGGCGGCAACTTCACGCTGGGGGAAACAGCCAAGCAGTGAAGATATGGAAGAA ATGATGAGAGTTTCACATGTGGCTAGGATCTCTTCACTACTAAAATATCTTCTCGGCAAGCTTAGTATTGCGAAAGGAAAACTAAGTAAAGCTGAGAAGG CACTGTATAAAGTACAGGAGCATCTGGACCCAAAAGAACTCCCATCAGATCTGGAAACAATAACCAACGAGGAGAGGTTCTTGTTTCGCCGGATTGGTTT GAGAATGAAATCATATCTTCCTCTGGGCAGGCGAGAGGTGTATGATGGTACTATAGAGAACATGCACTTGCATTGGAAATACAACGAGCTGGTAAAGATA CTTGTGACGGGAAAAAATGCTGCACAAGTGAAACACATTGCTATATCCTTGGAAGCAGAGAGTGGTGGAGTCCTTGTATCAGTGGACAGACTTCCTAAAG GCTATGCAATTATAATTTATCGTGGGAAGAATTATAAACGCCCCTTGGCAATGAGGCCTAAGAATTTGCTATCTAGGAGACAGGCATTAGCAAGGTCCAT TGAACTTCAGAGACGAGAGGCACTGAAGCACCATGTTTTGGATTTGGAAGAGCGAGTAGAGCTGATCAAGTCTGAACTGAAAGATGTTGAGGCTGGCAAG TCTTTACACACAGAGAAGACCCTTAAGACAATGTTGGAGGATGACGATGATGATAGCAGCAATAAGGAGTCGAGCTGA
AA sequence Show only first row Show all	>Lus10027610 pacid=23151261 polypeptide=Lus10027610 locus=Lus10027610.g ID=Lus10027610.BGIv1.0 annot-version=v1.0 MSLHLHPMNLLLPQTRTWEFRTSSPRVIRVYNTAETRRRPRPSFLEEVQQKWSRKQLSTREHFPWQQQQQKQRNEIKEEEENAIDVDIVRNRSGSDELEP PGIGGEPSTSFPLRNRSSSAPWVQGDRARHSRSINLADNHIVNGAIDDEAESAEMKANNSRQTSECNVAKLEALKETSSSRSSVESPWNIGLKMKNEMLK VSKSNTEIAERTLPGHELKRLRNVALRISERIKVGASGVNQSLVDAIHEKWTLDEVVKLKFEGPPSRNMKRIHEILESRTGGLVIWRSGTSVVIFRGMTY MLRCVRSYTKQKEAAIVDDATANKGTEDVFRTTLESTIRNPPKHHFNSLSETELVDLSELNNLLDSLGRRFQDWGGPEPLPVDADLLPAVVPGYKPPFRL LPYGVKHCLRDKETTKFRRLARTTPPHFALGRSRDLQGLAKAIVKLWEQSAIAKIAIKRGVENTRNERMAEELKVSEMDEHPSCLSCDRLMDVSVALILI VVHLLFLSVQRLTGGTLLSRNKEYIVFYRGNDFLPPAVMKTLKERQKLNLLQHVEEEQVRKMAPSNIRTTELPAVAGTLAETMAATSRWGKQPSSEDMEE MMRVSHVARISSLLKYLLGKLSIAKGKLSKAEKALYKVQEHLDPKELPSDLETITNEERFLFRRIGLRMKSYLPLGRREVYDGTIENMHLHWKYNELVKI LVTGKNAAQVKHIAISLEAESGGVLVSVDRLPKGYAIIIYRGKNYKRPLAMRPKNLLSRRQALARSIELQRREALKHHVLDLEERVELIKSELKDVEAGK SLHTEKTLKTMLEDDDDDSSNKESS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	0	1
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	1.0	0.9567
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	4.0	0.9392
AT1G53800			unknown protein		Lus10003930 [exp]	4.0	0.9139
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	5.7	0.9341
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	6.0	0.9119
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	6.0	0.9307
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	6.3	0.9219
					Lus10038585 [exp]	6.5	0.9284
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	8.8	0.9197
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	9.4	0.9103

Compare expression of checked genes

Lus10027610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.