Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56970 399 / 4e-135 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT1G75450 384 / 3e-129 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT4G29740 364 / 9e-123 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 356 / 9e-119 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT2G41510 321 / 4e-104 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 316 / 9e-103 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT5G21482 290 / 1e-92 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024289 [exp] 375 / 9e-126 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10003845 [exp] 369 / 4e-125 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10031188 [exp] 369 / 1e-123 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031765 [exp] 374 / 3e-122 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10031200 [exp] 347 / 1e-114 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10026471 [exp] 286 / 8e-91 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10005317 [exp] 262 / 2e-83 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 262 / 3e-82 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10035433 [exp] 249 / 1e-78 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152500 [exp] 473 / 5e-164 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.002G030500 [exp] 375 / 2e-125 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 374 / 2e-125 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.007G066100 [exp] 359 / 2e-119 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.006G047900 [exp] 335 / 6e-110 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 330 / 3e-108 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.001G020900 [exp] 314 / 6e-102 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.003G203600 [exp] 313 / 6e-102 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G221000 [exp] 282 / 1e-89 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.011G159600 [exp] 42 / 0.0008 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10027611 pacid=23151237 polypeptide=Lus10027611 locus=Lus10027611.g ID=Lus10027611.BGIv1.0 annot-version=v1.0 ATGGCAGCTAATATTGTTGCCACATACTTAATGCTAGTAATATGCTTCGCTCGCTTAGTCTCCGTCCACCACTTACTAATTAATTCCTCCTCCTCCAACC CTAAACTTATTGTTCATCATCATTATTATAATTATAGCCACGCCGCCGTAACCCTCCGCTCCGACAAAGCCGCTATTTCCTCGGTCGGAAATGACTACGG CAACATCGTACACCACTACCCTGCAGCTGTGCTCCACCCGTCTTCCGTGGAAGACATTGTAAACCTCATCAAACTCTCCTACAGCGGGCCCACCAGCTTC CCGGTGGCCGCCAGAGGGCGCGGGCATTCAGTTAGAGGACAGGCCATGGTGGTCGAGGATGGAAACGGCGTCGTGGTGGACATGATGCAGCTGAGGAAGA GGAGGAGCTCCAGCTCTCATCCTCGTCGTAACATTAACGTCTCGTCATCATCATCATCGGCATCTTTATATTTTGCTGACGTGGGAGGGGAGGTGTTATG GAGAGATGTGCTGGATGCCACGCTGGAACACGGAGTTGCGCCGCGTTCATGGACGGACTATTTGTATTTGAGCGTGGGAGGGACGCTGTCTAACGGTGGG ATTAGTGGTCAGAGTTTCCGTTACGGTCCTCAGATCAGCAACGTTCTTGAAATGGACGTCGTCACCGGGACAGGAAAGCTCGTCTCTTGCTCCCCAACCA ACAACGCAGAGCTATTCTATGGTGTATTAGGAGGACTAGGCCAGTTTGGTATCATCACTAGAGCCAGAATTCCTCTACACCCCGCTCCTCAAAGGGTCCG TTGGGTACGACTGCTATACACCGATTTCAGTGCATTCACAAAGGACCAAGAGACTTTAATCTCAATACACGGGACAATACAAGTAGATCATGGAATTGAT TATTTAGAAGGTTCACTAATGCTACATCATCAGGGCCGTGATCCCAACAACTGGAGATCATCATCATTTTACTCCAACTCTGATGTCCCGAGAGTCATCT CCCTTCTCTCCCGAAACCCTGTCGTTTACTGTCTCGAATTCGCAATCAGCTATTCTCATCAGAAGATAGAGGAAATATTAGTATTGGAAGGGCTAAGCTT CATCCCGGGGTTTGTTTTCACTAAAGATGTCACCTATGTTGACTTCTTAGACAGGGTCAGAAGTGGGGAGCTTGAGCTTCACTCGCAACTACTGTGGCAA GTACCGCATCCTTGGCTCAATCTATTCGTACCCAGATCTCGCATTCACGACTTCCATTCCGGAGTTATCATTGACATTGTTCTTCGTAGAAACATCACAA CGGGACCTGTCCTTATCTATCCCATGAACGCTAACAAGTACGTACGTATGTGA
AA sequence Show only first row Show all	>Lus10027611 pacid=23151237 polypeptide=Lus10027611 locus=Lus10027611.g ID=Lus10027611.BGIv1.0 annot-version=v1.0 MAANIVATYLMLVICFARLVSVHHLLINSSSSNPKLIVHHHYYNYSHAAVTLRSDKAAISSVGNDYGNIVHHYPAAVLHPSSVEDIVNLIKLSYSGPTSF PVAARGRGHSVRGQAMVVEDGNGVVVDMMQLRKRRSSSSHPRRNINVSSSSSSASLYFADVGGEVLWRDVLDATLEHGVAPRSWTDYLYLSVGGTLSNGG ISGQSFRYGPQISNVLEMDVVTGTGKLVSCSPTNNAELFYGVLGGLGQFGIITRARIPLHPAPQRVRWVRLLYTDFSAFTKDQETLISIHGTIQVDHGID YLEGSLMLHHQGRDPNNWRSSSFYSNSDVPRVISLLSRNPVVYCLEFAISYSHQKIEEILVLEGLSFIPGFVFTKDVTYVDFLDRVRSGELELHSQLLWQ VPHPWLNLFVPRSRIHDFHSGVIIDIVLRRNITTGPVLIYPMNANKYVRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	2.4	0.9167
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	4.2	0.8844
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	5.5	0.9259
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	11.7	0.9180
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10038813 [exp]	17.3	0.8972
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10002535 [exp]	22.2	0.7844
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	28.6	0.8764
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10013339 [exp]	31.1	0.8971
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	46.3	0.8445
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	53.7	0.7876

Compare expression of checked genes

Lus10027611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.