Plant FIBer expression Database

Lus10027612 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025008
[exp]
609 / 0 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10042979
[exp]
241 / 9e-69 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10039353
[exp]
193 / 2e-52 ND /
Lus10001889
[exp]
174 / 7e-51 AT1G52950 42 / 6e-05 Nucleic acid-binding, OB-fold-like protein (.1)
Lus10008725
[exp]
171 / 2e-49 ND 38 / 0.003
Lus10036312
[exp]
171 / 1e-44 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10010590
[exp]
169 / 1e-44 ND /
Lus10029961
[exp]
162 / 1e-41 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3)
Lus10023787
[exp]
150 / 6e-39 ND 44 / 3e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G004401
[exp]
52 / 7e-07 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
Potri.015G057300
[exp]
52 / 1e-06 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Potri.019G061550
[exp]
52 / 2e-06 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence
>Lus10027612 pacid=23151286 polypeptide=Lus10027612 locus=Lus10027612.g ID=Lus10027612.BGIv1.0 annot-version=v1.0
ATGTCTGACACGGTGATGGGATGCCTTCTCGAGTGCAGGGCCGCCGCCCACCTCCATAATTCTTCCCCTTTTTCCACTGCTCTCCCATCAAGCCCATGTC
TTCACTCCCTCTCTCTTAACACAAATCCTTCCTCTTCAATCATCTCCACCCTTTTCCTGCACACTCTACCAGGCTCTCAAAACCCTTGCATCTGCAGATT
ACCCACCAAACGTGTTCTCTGTCAAAATCCCACCGCAGCAGCTCCCGGGTTCTACCAACAGCCCACATCGATTATGCTCCGTGACCTTTCGCCGGAAAAC
CTGCCACCCCACTTGCACATGCGCCTCCTGCACCTTTGGAAACTTGGGAAGCCTGGCGAACCCGGTAATTTTTACGCGCTCGGCACGCTATGGACCGATT
CCGAGGGTACACGGATTCAGGGTGATACCCTGAGGAATTTTTCACCGACCATTGAGAAGCGCATATCTGTCGGTTCTGTGTATAAGATATCGGAATACTC
ACTCCGCCCTCCCCGTTCTTCATTCCGCTCATGTCCCTTCCCACACTGGTTGAATCTCACACCCACCACCAAGTTCGAACTTCAACCCCCGACTGAACCA
CCGTTCCTTGAGGATGCCTTCGATTTCCTCCCCTTTACCATGCTCCCGGATCGGATGTCTGATTGCCCATACTTGACCGATGTGCTGGGAAAGGTAGTCA
AGATTGGCCCCCCCAGCCATGTTGAATGCCCATACGGCGTCACCCCTGTGCAATCCCTAACCATTATCAATGCTAGGTTTGTCCATTCAGCCTTTGCTTG
CACTCCAAACACTAAGAGGTTGCGTCAATTACAGTTAGTGTTATCATGCAGTGGCGTGCGTGTTGAAGTGTCGTTATGGTCCGAACTGGCCTTTATCCTG
GACGCAGATATGTTATCCCTTGATGATGTTGCTGAGCCCGTCATCGTTGCTCTGTCGGCCTTCCGCATTGGCAGATTCCAAGGTTTGCTTCTGTGCACCC
TTTGTTTCACCACATACCCCGAACCTTGCTTTTTTCCTTATGTCGTCCTGGCCCATGTGCAGATGATATTACAGCCACTAGCGCGCAGGCGAGCCGCGCT
GGTCTTCAGGCGAGCCGTGTTGTTCTACAGCCTCGATACCCAGCTGCTGACGAGCTATGCGCATAATTCCACGACAGAGACCACTTTCATATTGCTTGGC
CTCACAGCCGACCGAATACTACCCATCACAGCAACTGAACTAGCACGAGCCTATCCCAATGACTACGGCGACCTCCCACCCCCAATTCAGGTATTGGTCG
GCCAGAACGTAACTTTTGAAGTCCAGTTGCCCCGTCAAATTCATGCTAGCCCCTATGATGAGTTTCGTATCACCAAAATTTGGGGCTTGGTGGCTCACCG
TGCTCAACTACTGGCTCAACTACCCCCGCCACCCTCTCAGCCGCCAAGTCCGCCTGCTCGCCATGACACTCCTATCCCTCCGGACCCAAACTATGTCCCC
CCAGTCCTCCTGTATCCGAATGCTGCGAAGGGACCAGCCGTAGCCGAGCTCTCCCGACCTCTTCGCCCCTACTACATACCCTGGCTCTTCCTCTGCCCTC
CCTTCTTCAAGGTTTGTGCTCAAAGTGTTCCTCATCAACAATTAAGCATTTGCTCTATATGCACATCGCTAACATTTGTACCCATGCCCAGCACCTCCGC
CATTGCCAATACATCTGCACCTGTAACTCCATCACCTTTAGCGAATAGCCCTTCCGGCCTGTGGCCCGAAAGTCCCACATCTCTTACACCACCGTCACAG
CTCCTCTCTGATTTGGAAACAACTTCGGTGGCAATACCACTTGACATTGACGACAACCTGCCACTAGCGGCATTGTTGGCCAAGAAACGGGCAACTAAAC
ATGCTATTACGCCCAATTCCACACCTCCCCCGACGCCTGCCACGTCTACACCCTTCCCCCGCACCAACGCACAAACACTTTCCACAACCCAGGCAGCTTC
CCTGTTGGCCTCGGTCAAACGTGAGCAACTCACGCGTCGGAAGACACCTGTTCGTGCAAAGAAGGAGAAACTAGCAACCCCGCACCCACCTGAGCCTCTA
GAGCATACAATGTCCAGTAGGGGGCGCCAACGCACCTGGAAGCTGCTCTTTGATGCCTAG
AA sequence
>Lus10027612 pacid=23151286 polypeptide=Lus10027612 locus=Lus10027612.g ID=Lus10027612.BGIv1.0 annot-version=v1.0
MSDTVMGCLLECRAAAHLHNSSPFSTALPSSPCLHSLSLNTNPSSSIISTLFLHTLPGSQNPCICRLPTKRVLCQNPTAAAPGFYQQPTSIMLRDLSPEN
LPPHLHMRLLHLWKLGKPGEPGNFYALGTLWTDSEGTRIQGDTLRNFSPTIEKRISVGSVYKISEYSLRPPRSSFRSCPFPHWLNLTPTTKFELQPPTEP
PFLEDAFDFLPFTMLPDRMSDCPYLTDVLGKVVKIGPPSHVECPYGVTPVQSLTIINARFVHSAFACTPNTKRLRQLQLVLSCSGVRVEVSLWSELAFIL
DADMLSLDDVAEPVIVALSAFRIGRFQGLLLCTLCFTTYPEPCFFPYVVLAHVQMILQPLARRRAALVFRRAVLFYSLDTQLLTSYAHNSTTETTFILLG
LTADRILPITATELARAYPNDYGDLPPPIQVLVGQNVTFEVQLPRQIHASPYDEFRITKIWGLVAHRAQLLAQLPPPPSQPPSPPARHDTPIPPDPNYVP
PVLLYPNAAKGPAVAELSRPLRPYYIPWLFLCPPFFKVCAQSVPHQQLSICSICTSLTFVPMPSTSAIANTSAPVTPSPLANSPSGLWPESPTSLTPPSQ
LLSDLETTSVAIPLDIDDNLPLAALLAKKRATKHAITPNSTPPPTPATSTPFPRTNAQTLSTTQAASLLASVKREQLTRRKTPVRAKKEKLATPHPPEPL
EHTMSSRGRQRTWKLLFDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G52950 Nucleic acid-binding, OB-fold-... Lus10027612
[exp]
0 1

Lus10027612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.