Plant FIBer expression Database

Lus10027613 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039353
[exp]
625 / 0 ND /
Lus10007415
[exp]
335 / 2e-111 ND /
Lus10006886
[exp]
300 / 7e-99 ND /
Lus10007416
[exp]
248 / 4e-79 ND /
Lus10026444
[exp]
216 / 1e-65 ND /
Lus10017801
[exp]
155 / 3e-45 ND /
Lus10023004
[exp]
153 / 5e-44 ND /
Lus10042979
[exp]
143 / 7e-37 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10014851
[exp]
138 / 4e-36 ND 34 / 0.005
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10027613 pacid=23151232 polypeptide=Lus10027613 locus=Lus10027613.g ID=Lus10027613.BGIv1.0 annot-version=v1.0
ATGGCAAGCAAATACAACACGGCTCATACTCCATCAGAGCTGGCACCGTACATTTGTGACATCACTGCACTGGCTGATGGCGTCAATACAGGTGGAATAC
TCTTGCGATTTCTGTGTTCATGGCGAGCAGCTTTTGGCACTCGGCCAGTTGCTCAATGCCCCCTTTTAACACAGTGGCTCGTCATCCATAACATCCAGGA
AAACTGTGTCGAGGGCTTCACCTCATGGGACTATGCAGCGGCGGTTTTGTCTAACCTGACCCAAGGGACCCTGTACGCTATCCCATTCCCATGTGTTATA
CCAGCCACTAGAGAGATGCGTTCCTGTCCGGGTGATTTCACTCTTGCTATCTACCCTGAACAGCTTATGTCCCCTGTGCATGAAGACCCAGACATGCCTT
TTTTTCCATCAGAGATCTTTAACATCGTCCCAGCAAAGACCCTCTGCAACCGGAATGTTACACGCGCCTTCACTTCTGACATCATTGGTTGCGTCGTTTC
CATAACCGATCCTGCACATGTTACTCGTGGCGCTTTGGCTTTCACAGTTGTTGTTGATGACCCAGGCGCGTTTCGGGTATCTGTCCGTTACAGCTCCTTT
GTACCGCCTCCTGGATTCTCCATCAACGATCTAGCTACTGCTGAACAAGTCCGCCCCGTCCTTTGCATTTTCACATGCCTCGCAGCCTGTGACCCTCCAG
GAGACAGGCTTACCTTGGAAGGTACAAAAGCATCCCGCATCATATTTGCACCGTACATGGAGCCGTACCGTCAACATTACAACGCGTTTGCTCACAAACA
TATTCCTGTGCGCTTGGTGAGCCCAATTGCACCAAGTTGCTTTTCATTCATACGTGGCCAGCTCCCACGGAAGTTCCCTCTGGCAGCTTTGCTCTTGCAG
GAACCAGTCCTGCCTGCTCAAGCAAATGAAACTGTTTGGTGTATGATCCGTTTAGTTAAAGTTCATAACCAGGCTGCCAACGTTGAGTACGGTGATGGCA
CCCCAAGGTATGCTGTTCTTGCAGGATGTTCTGATGCTACGGCTTGCACGAACTTCCTCTTTCCAAGCCCGGCCGCTGATCTCCTCTTCAAAATGCATGC
ATCTGAGTACGTTGCGTTGGACTCAACCAGTCAGCAGGACCTACTAGCGAGTCTCCAGGATCGTACTTTCATTATCGAAACACGCTCGGTGGGCCCCGAA
CCTAGCAGCCGTGCAAAGTTTGTTGTGGAAAACTTGTGGGACCCGATCGCTGGATTCTTTTAA
AA sequence
>Lus10027613 pacid=23151232 polypeptide=Lus10027613 locus=Lus10027613.g ID=Lus10027613.BGIv1.0 annot-version=v1.0
MASKYNTAHTPSELAPYICDITALADGVNTGGILLRFLCSWRAAFGTRPVAQCPLLTQWLVIHNIQENCVEGFTSWDYAAAVLSNLTQGTLYAIPFPCVI
PATREMRSCPGDFTLAIYPEQLMSPVHEDPDMPFFPSEIFNIVPAKTLCNRNVTRAFTSDIIGCVVSITDPAHVTRGALAFTVVVDDPGAFRVSVRYSSF
VPPPGFSINDLATAEQVRPVLCIFTCLAACDPPGDRLTLEGTKASRIIFAPYMEPYRQHYNAFAHKHIPVRLVSPIAPSCFSFIRGQLPRKFPLAALLLQ
EPVLPAQANETVWCMIRLVKVHNQAANVEYGDGTPRYAVLAGCSDATACTNFLFPSPAADLLFKMHASEYVALDSTSQQDLLASLQDRTFIIETRSVGPE
PSSRAKFVVENLWDPIAGFF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10027613
[exp]
0 1

Lus10027613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.