Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 478 / 1e-166 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 471 / 4e-164 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT5G36220 465 / 2e-161 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT3G28740 462 / 2e-160 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37360 448 / 5e-155 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37320 445 / 1e-153 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 443 / 4e-153 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT1G66540 432 / 2e-150 Cytochrome P450 superfamily protein (.1.2) AT2G23220 433 / 1e-148 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1) AT4G37400 432 / 1e-148 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011958 [exp] 765 / 0 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10020437 [exp] 517 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 427 / 3e-146 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024816 [exp] 420 / 2e-143 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 407 / 2e-138 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024818 [exp] 394 / 3e-133 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 389 / 1e-131 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 383 / 3e-129 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10041643 [exp] 378 / 7e-127 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006000 [exp] 463 / 1e-160 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G050000 [exp] 460 / 5e-160 AT4G37370 509 / 3e-178 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 452 / 2e-156 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 445 / 2e-153 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 439 / 3e-151 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 438 / 9e-151 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 433 / 5e-149 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.007G049900 [exp] 431 / 4e-148 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G205200 [exp] 421 / 4e-144 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143900 [exp] 417 / 6e-143 AT4G37370 511 / 5e-179 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10027614 pacid=23151190 polypeptide=Lus10027614 locus=Lus10027614.g ID=Lus10027614.BGIv1.0 annot-version=v1.0 ATGTGGCTCAACTTCGGTTCACACCCAGTTGTAGTGGTGTCATCTTCCGAGGCAGCTGAAGAATGTTTTACCAAAAACGACGTCACTCTGGCCAACCGTC CCAATCACATGGTGGGGAAGCACATTGGGTACAACCACACTACAATGGTCCAGGCACCCTACGGGGACCATTGGCGCAACCTCCGCCGCATTGGATCCCT TGAGATCTTCTCCTCAGCCCGTCTCAACAACTTCTTAGCCATCCGAGCTGACGAGGTCAAGCGCCTCACGCTGCGCCTCGTATCCTCATCGTCATCCAAT AATCATAATAAGGTGGAGCTGAGGGGGGTGCTTCAGGATTTAACACTCAACAACATGATGAGGATGATTGCCGGGAAGAGGTACTATGGGGAATCCGATG GAGACATGGAAGAGGCGGATCAGTTCAAGGAGATGATGGCTGAGGTTATGGGGATTGGATCAGGCAACCCTGCCAATTTCATACCACTCTTGAAATGGGT TGGCTTTGGCGGCTTTGAGAGGAAGCTGATCCGCCTTTCTAAGAAAATGGACGCTTTCATGCAGAAGTTGATTGATGATCGAAGATGCATATTGGAAAAA GACGACCACTCCAAAAACACAATGATCGATCACCTACTGTCCTTGCAGCAGTCACAGCCAGAGTACTACTCTGACCAAATTAAAGGGATTATACAGATAA TGCTACTAGCCGGAACGGACACATCGGCGGTGACAATAGAATGGGCGATGTCAAACTTACTCAACCATCCAGAAAAGCTAAAGAAAGCAAGAGATGAGAT CGACAGCCAAGTCGGGGAAGAGAGAGTGGTGGAGGAATCAGACCTCTCCAAGTTGAAGTACATTCACAACATAATCTCCGAAACTCTGCGATTAAACCCG TCAGCTCCGCTACTAGTCCCTCACCGCTCTTCCAAGGACTTCACCCTCAGCGGCTACCACATCCCGCAAAACACAATGCTGCTGGTTAACGCATGGGCTA TCCACAGGGATCCTCGTGTCTGGGAAGATGCTACCACTTTCAAACCTGAGAGGTTTGAAAATGATGGTGATGATGGGGATAATAAGTATAAGCTGATTCC TTTTGGAGTTGGTCGAAGGGCTTGTCCAGGGACTGGGTTGGCTCACAGAATGGTTGGATTGACTCTAGCAACTTTGATACAGTGCTTTGACTGGGACAAA CTTGAAGAGATTGATATGGATGAAGGCAGTGGCCTTACGATGCCTAAACTCATTCCTCTTCAGCTCAATTGCAAGCCTCGTCATCCCATTTTCACCGCCA TCTTTTCTTCCATCAACTCAATCTAA
AA sequence Show only first row Show all	>Lus10027614 pacid=23151190 polypeptide=Lus10027614 locus=Lus10027614.g ID=Lus10027614.BGIv1.0 annot-version=v1.0 MWLNFGSHPVVVVSSSEAAEECFTKNDVTLANRPNHMVGKHIGYNHTTMVQAPYGDHWRNLRRIGSLEIFSSARLNNFLAIRADEVKRLTLRLVSSSSSN NHNKVELRGVLQDLTLNNMMRMIAGKRYYGESDGDMEEADQFKEMMAEVMGIGSGNPANFIPLLKWVGFGGFERKLIRLSKKMDAFMQKLIDDRRCILEK DDHSKNTMIDHLLSLQQSQPEYYSDQIKGIIQIMLLAGTDTSAVTIEWAMSNLLNHPEKLKKARDEIDSQVGEERVVEESDLSKLKYIHNIISETLRLNP SAPLLVPHRSSKDFTLSGYHIPQNTMLLVNAWAIHRDPRVWEDATTFKPERFENDGDDGDNKYKLIPFGVGRRACPGTGLAHRMVGLTLATLIQCFDWDK LEEIDMDEGSGLTMPKLIPLQLNCKPRHPIFTAIFSSINSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	2.6	0.9868
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	6.0	0.9840
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	6.9	0.9843
					Lus10000858 [exp]	7.5	0.9826
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	7.7	0.9794
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	7.9	0.9823
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	8.5	0.9829
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	9.4	0.9825
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	12.5	0.9838
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	13.0	0.9834

Compare expression of checked genes

Lus10027614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.