Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 347 / 4e-119 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 329 / 6e-112 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 326 / 8e-111 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 201 / 1e-62 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 59 / 8e-10 NRP2 NAP1-related protein 2 (.1) AT1G74560 56 / 5e-09 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011957 [exp] 414 / 2e-145 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011956 [exp] 405 / 7e-142 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 285 / 8e-95 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 286 / 2e-91 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10011959 [exp] 253 / 3e-81 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001235 [exp] 194 / 5e-60 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042106 [exp] 186 / 7e-57 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10026197 [exp] 181 / 1e-54 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001231 [exp] 175 / 2e-52 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067800 [exp] 351 / 2e-120 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.006G148600 [exp] 348 / 1e-119 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 231 / 1e-73 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 231 / 9e-70 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 223 / 3e-69 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 219 / 2e-67 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 218 / 5e-67 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.017G080700 [exp] 62 / 8e-11 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 57 / 3e-09 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 54 / 2e-08 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10027615 pacid=23151268 polypeptide=Lus10027615 locus=Lus10027615.g ID=Lus10027615.BGIv1.0 annot-version=v1.0 ATGAGCATCGACAAGATCGACATGGCCGATCTTACTGCGGCTCTTAATGCCCAGGACCGCGATGGACTTGTGAACGCACTCAAGGATAAGCTGCAAAATT TGGCTGGTCTGCATTCTGATATGTTGGAGGCTTTAAGTCCCAAAAGCCAACATGATGAGCTAGAAGCAAAATTCTTTGAGGAGAGGGCAGCCCTTGAAGC AAAGTATCAAAAACTGTCCCAACCACTCTATACCCAGCGGTATGAAATCGTTAATGGTGTCTCCGAAGTGGAGGTATCCAAAGAAGAAGGGGATAGCAAC GATGAGGCTACTGAAGAGAAAGGTGTTCCTGAGTTTTGGCTGCTTGCAATGAAGAACAATGAAGTCCTAGTAGAGGAGATTACTGAGAGGGACGAGGGAG CTCTAAAGTTCTTGAAAGATATTAAATGGAACAGAGTTAAGGAGCCCAAAGGATTCAAGCTGGAGTTTTTCTTTGATACCAACCCTTATTTCAAGAACAC TGTCCTAACCAAGACATACCATATGATTGATGAAGATGATCCCATTCTTGAGAAAGCTATTGGGACTGAAATTGAATGGTATCCGGGGAAGTGCTTGACC CAAAAGATCCTGAAGAAGAAGCCCAAAAAAGGATCTAAGAATGCTAAACCTATAACCAAAACCGAGGATTGTGAGAGCTTTTTTAACTTCTTCAGTCCTC CACAAGTCCCTGAGGATGATGAGGAGCTAGATGAAGATACTGCTGAAGAGCTTCAAAATCAGATGGAACAAGACTATGATATTGGCTGTATGGTTCTGAC TAATGAGTTGATAATTATGATGGCGATTCAGTTCTACCATCCGGGACAAGATCATACCGCATGCTGTGTCATGAAGAGTGGTAGCAAGACACAAGCTTCA GACGGTCAGCAGCAGGGTGAGCGGCCTCCAGAGTGCAAGCAGCAGTAA
AA sequence Show only first row Show all	>Lus10027615 pacid=23151268 polypeptide=Lus10027615 locus=Lus10027615.g ID=Lus10027615.BGIv1.0 annot-version=v1.0 MSIDKIDMADLTAALNAQDRDGLVNALKDKLQNLAGLHSDMLEALSPKSQHDELEAKFFEERAALEAKYQKLSQPLYTQRYEIVNGVSEVEVSKEEGDSN DEATEEKGVPEFWLLAMKNNEVLVEEITERDEGALKFLKDIKWNRVKEPKGFKLEFFFDTNPYFKNTVLTKTYHMIDEDDPILEKAIGTEIEWYPGKCLT QKILKKKPKKGSKNAKPITKTEDCESFFNFFSPPQVPEDDEELDEDTAEELQNQMEQDYDIGCMVLTNELIIMMAIQFYHPGQDHTACCVMKSGSKTQAS DGQQQGERPPECKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10035009 [exp]	1.0	0.8405
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	2.4	0.8342
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	3.9	0.8259
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10039177 [exp]	3.9	0.8057
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	8.5	0.8137
AT2G45520			unknown protein		Lus10009304 [exp]	9.5	0.7890
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	9.9	0.7870
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	10.8	0.6953
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10006867 [exp]	13.6	0.8033
AT4G38980			unknown protein		Lus10031089 [exp]	16.3	0.7785

Compare expression of checked genes

Lus10027615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.