Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21430 175 / 4e-55 NdhU, CRRL NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011955 [exp] 225 / 1e-74 AT5G21430 99 / 1e-25 NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2) Lus10030803 [exp] 42 / 0.0001 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 41 / 0.0004 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10014584 [exp] 40 / 0.001 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221900 [exp] 179 / 1e-56 AT5G21430 190 / 3e-61 NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G073900 [exp] 42 / 0.0003 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10027616 pacid=23151247 polypeptide=Lus10027616 locus=Lus10027616.g ID=Lus10027616.BGIv1.0 annot-version=v1.0 ATGGCAGCCACTCCCACTGCAGCACTCTACATTTGCGGGACTTCCCTGCACCGATCCGCCTCCACAACCAATTACGGCAGCGATTGTTTTACCATCCTCT CGTCGAAATCAAAAGCACGACGACGACGACATAACAGAATAGTAGTTACCAGAAGCGGGGGAGCTGATGCAGCAACGGAGGTGGTGGAAGAAGGAGGAGA TTGGGAAGGCTCCATTGAAGCTCCTCAAGGCCCTCCTTCTTTGATTTCCGCTCTCAACGTCGAAAGGGCTTTCCGCGGAATCCCCATTACAGAAGTAGAT TACTATGCCGTACTAGATCTTCCAAGAGGATGTTCCTATGACGAGGTCGAAATTGGATATAAGAAGATGGTAGAGCAACTGCTGAACAAGGGACTCGAGG AGGAACAACTCAGTAAAGAAATGGCAATGCTCAAGGAATCATATTCAATATTGTCATCAGTGCAAGAGAGGAGGATGTACGATTGGAGCTTGGCGAGGAC TGATAATCCTCAACGATACAGTTGGCCATCACAGGCCGACATCACACAGTTACCCTCACCCGAAACTCCCCCGATTCTCCAGGAACCGGAGGACGAAGGA GTAACAAGAGCGGTGGGTTACTTTTTCTTAGGGTGGTTTGTCTTATCAGCCGTCTTGTCCATAGCACTCAACCGATGA
AA sequence Show only first row Show all	>Lus10027616 pacid=23151247 polypeptide=Lus10027616 locus=Lus10027616.g ID=Lus10027616.BGIv1.0 annot-version=v1.0 MAATPTAALYICGTSLHRSASTTNYGSDCFTILSSKSKARRRRHNRIVVTRSGGADAATEVVEEGGDWEGSIEAPQGPPSLISALNVERAFRGIPITEVD YYAVLDLPRGCSYDEVEIGYKKMVEQLLNKGLEEEQLSKEMAMLKESYSILSSVQERRMYDWSLARTDNPQRYSWPSQADITQLPSPETPPILQEPEDEG VTRAVGYFFLGWFVLSAVLSIALNR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	0	1
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	3.5	0.9452
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	5.3	0.9446
AT3G47070			unknown protein		Lus10001204 [exp]	7.3	0.9435
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	8.2	0.9402
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	9.2	0.9383
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	9.5	0.9357
AT2G03420			unknown protein		Lus10037118 [exp]	9.5	0.9295
AT5G61820			unknown protein		Lus10004249 [exp]	10.2	0.9256
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	10.5	0.9398
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	11.0	0.9374

Compare expression of checked genes

Lus10027616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.