Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 736 / 0 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 711 / 0 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G53470 447 / 9e-143 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 447 / 1e-142 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 445 / 2e-142 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 403 / 3e-126 Mechanosensitive ion channel family protein (.1) AT2G17010 301 / 4e-89 Mechanosensitive ion channel family protein (.1) AT3G63000 166 / 3e-44 NPL41 NPL4-like protein 1 (.1) AT2G47970 159 / 6e-42 Nuclear pore localisation protein NPL4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019694 [exp] 931 / 0 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 929 / 0 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 623 / 0 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 580 / 0 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10011952 [exp] 578 / 0 AT5G19520 248 / 5e-76 mechanosensitive channel of small conductance-like 9 (.1) Lus10036587 [exp] 511 / 8e-170 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 504 / 2e-166 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 476 / 1e-155 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 478 / 4e-154 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222500 [exp] 929 / 0 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 668 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 536 / 5e-179 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 504 / 8e-167 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.004G178900 [exp] 464 / 5e-149 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 449 / 5e-143 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 447 / 2e-142 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 428 / 4e-136 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.014G135590 [exp] 176 / 8e-48 AT3G63000 609 / 0.0 NPL4-like protein 1 (.1) Potri.002G213600 [exp] 176 / 1e-47 AT3G63000 596 / 0.0 NPL4-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel CL0366 [flax] [poplar] JAB PF05021 [flax] [poplar] NPL4 NPL4 family
Representative CDS sequence Show only first row Show all	>Lus10027617 pacid=23151234 polypeptide=Lus10027617 locus=Lus10027617.g ID=Lus10027617.BGIv1.0 annot-version=v1.0 ATGTGCATCAGACTATTTAAGGAAGGATGGTTTGTGACTGAGATTAGGGAGGATATGGATCCTAAGTTGTCTGTCATGAAGAAGGATGTTGTTATTGGTG TCAAAGATGTCAAGGAGGTCGACAATGATTTCTTCTTGGTTGTTGCCAAGATTCTCGATCATATGGGGCCTCTTTCATCAACATCTCCTAGCGAGAACAG AGTCACCCAAGTGACGATGAGAGCGCTGAAGAATCACCTTGAACGGGCAAGGAGTGTTCCAGTGGTGAAAAGAATATCAGATTCCCATGTGCTGCTGTTT CTGGCTAGGGTTCTAGACGTTGGATCCGATGTTCCTGCATTGGCAGAGTGTGCACGAACACAGGCATCGGTCCCTGAAGACTTTAGAGTTTCTCCAGTAC TAGTAGCCTACTACAGTGCTGGATTGCTTGCTGGCTGCATAAAATTTAAACATCCTCTGCTGGTGGGTTTCCACTTTGCTCTCTGCTCTATCTATGTCGG ATATAGAACATCCAAGCAGTCATTGAGCAAAATGACATCGTTAGAGAAGAAACCCAGCAATGGCGACCAAGTTGTCATAACATTCTCAACAACACCACCC AGCCCAAAGGTTGAAACTTCAATCCCCCCTGCGGCCACAGAAGCTCTTGGAGGTAGCAGGCAAAGCTTTCCTAATTCACCCATCAAAGACTCTTCTTTGC CAGCGAGCTGCAATTCACCTGAGATTTCAAGGTTCAGTCCCAGCCCCAATAAGCCCCCCAAAATCCCAACTACAAATGAAAACCTTCTCAGGAGGAGGTC ATTCTCCAGGTCATTATATTCAAAACCCAAGTCTAGGTTCGGAGAGCAACCTGTTACTGTTGATGCCAACGCACTTGATAATCATACTACATCTACTCTC CAGCATCATTTTGCTTCTGGTTCATCACCCTATAGGAATTCCCCCAATGCCAAGTCTCCATCTGTTATTAGGATAACACAGAAAACACCCTTGATGTCCT CTCCTGGAAAAATCACGGTCAAGGAGGAAGATGAGGACGATGAGGAGGAAGAGGAGGAGCAGGAGAGGGAGTTTGTTCGCCGGGTTGAGATTCACAAACG GAAGAGTAAGAGAGGTAAAACTATGGCCAAGTATGTAATTCAGTGGCTGGCAATTTTGTCCATTGTTGGTTGCTTGATAGCTAGCTTGACTATTGATAAG CTGGAGAGGACCAAAATCTGGGGGTTAGAGTTTTGGAAATGGTGCGTTCTTGTGATGGTGATCATGTTCGGGTTATTGCTCACTAGTTGGTTTATGCACA TTGTGGTTTTCCTGATTGAGATTAACTTCTTGCTGAGGAAGAAAGTTTTGTACTTTGTTCATGGCTTGAAGAAGAGTGTTCAGGTGTTTGTTTGGATAGC TTTGGTTCTTGCAACTTGGTCTTTATTATTCAGAGGGGAAGTTGACGCTTCAAAGACCGCTACCAAGATTCTAGACACGGTTACATGGACTCTCGTCTCA CTTCTTATCGGGTCGTTCTTGTGGCTGTTGAAGACTCTGTCGCTGAAAATATTGGCTTCGAATTACCATGTCAAGAGATTCTTCGATAGGATTCAAGAAT CAGTTTTTCATCAGTATGTCCTGCAAACACTTTCAGGGCCTCCGCTGATAGAGGCAGCAGAGAAGGTAGGGAAAGTAGCTAGCACAGGAATGCTGAGTTT CAGTATGTTAAAGGGGAAAAAAGGAACAAAGGAGAAAAAAGTGATTGATATGGCACAGTTTCACAAAATCAAGCAAGAAAAGGTTTCAGCTTGGACAATG AAAGTTTTGGTGGATGCAGTCACTAAATCTGGGATCTCGACGATTTCGAATTCGTTGGATGAGAGCCGCCATGATGCAGGAGGAGGGAATACAGATCAAG AGATTACTAACGAACTGGATGCAACTGTTGCAGGATTACGCATTTTCAGAAACGTTGCTCCTCGTCGTTGCAAGTACATTGAAGAAGAGGACTTTTTGAG ATTTATGATCAAAGAAGAGGTCGATCTCTTCTTTCCGCTGATTGAAGGTTCTGAAAGTGGAAAGGTTGACAAGAAAGCCTTTACTGAATGGGTGGTGAAG GTGTACAATGGCCGGACGGCACTTGCACACGCCCTGAATGATACGAAAACGGCTGTTAAACAGCTTAACAAATTAGTGACAGGGATCCTAATTGTTGTGA CGATTGTTATATGGCTTCTGCTTATGCAGATCGCTACCACGAAAGTGCTGGTGTTCCTCTCGTCGCAGCTGGTGTTGGCTGCTTTTATGTTTGGGAACAC TTGCAAGAACATATTCGAGGCTATCATATTCGTATTCGTGATGCATCCATTTGATGTCGGGGATCGTTGTGTTGTGGATGGTGTCCCACTCTTGGTTGAG GAGATGAACATTCTAACAACGGTTTTCCTGTCACTGAGCAATGAAAAGATATTCTATCCTAATTCAGTTCTGGTTACCAAGCCTATCAGCAACTATTATA GAAGCCCGGATATGGGTGATACCGTGGAGTTCTCTATCGATTTCGCCACGCCAGTGGAGAAGATTGGTCTGCTCAAGGATAGAATCAAGAAATACTTGGA GAGCAATCCTCAGCATTGGCATCCGAACCACGGTATAGTGGTGAAGGAACTAGAAAACGTGAACAAGCTAAAGATGGCTTTGTATTGTAACCACACGATG AACTTCCAAGAGTATGCAGAAAAGAACAAGAGGAGGACTGAGTTGATGATGGAGATGAAGAATATCTTTGAGGAGCTATGCATTGCATACCATCTTCTAC CACAGCATGTGCATCTGAAATCTGCTGATGCGCTGATGCGCAACCAGTGA
AA sequence Show only first row Show all	>Lus10027617 pacid=23151234 polypeptide=Lus10027617 locus=Lus10027617.g ID=Lus10027617.BGIv1.0 annot-version=v1.0 MCIRLFKEGWFVTEIREDMDPKLSVMKKDVVIGVKDVKEVDNDFFLVVAKILDHMGPLSSTSPSENRVTQVTMRALKNHLERARSVPVVKRISDSHVLLF LARVLDVGSDVPALAECARTQASVPEDFRVSPVLVAYYSAGLLAGCIKFKHPLLVGFHFALCSIYVGYRTSKQSLSKMTSLEKKPSNGDQVVITFSTTPP SPKVETSIPPAATEALGGSRQSFPNSPIKDSSLPASCNSPEISRFSPSPNKPPKIPTTNENLLRRRSFSRSLYSKPKSRFGEQPVTVDANALDNHTTSTL QHHFASGSSPYRNSPNAKSPSVIRITQKTPLMSSPGKITVKEEDEDDEEEEEEQEREFVRRVEIHKRKSKRGKTMAKYVIQWLAILSIVGCLIASLTIDK LERTKIWGLEFWKWCVLVMVIMFGLLLTSWFMHIVVFLIEINFLLRKKVLYFVHGLKKSVQVFVWIALVLATWSLLFRGEVDASKTATKILDTVTWTLVS LLIGSFLWLLKTLSLKILASNYHVKRFFDRIQESVFHQYVLQTLSGPPLIEAAEKVGKVASTGMLSFSMLKGKKGTKEKKVIDMAQFHKIKQEKVSAWTM KVLVDAVTKSGISTISNSLDESRHDAGGGNTDQEITNELDATVAGLRIFRNVAPRRCKYIEEEDFLRFMIKEEVDLFFPLIEGSESGKVDKKAFTEWVVK VYNGRTALAHALNDTKTAVKQLNKLVTGILIVVTIVIWLLLMQIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVPLLVE EMNILTTVFLSLSNEKIFYPNSVLVTKPISNYYRSPDMGDTVEFSIDFATPVEKIGLLKDRIKKYLESNPQHWHPNHGIVVKELENVNKLKMALYCNHTM NFQEYAEKNKRRTELMMEMKNIFEELCIAYHLLPQHVHLKSADALMRNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	0	1
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	9.9	0.7237
AT4G25315			Expressed protein (.1.2)		Lus10019851 [exp]	16.4	0.7643
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	16.7	0.7403
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	19.2	0.7137
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	19.7	0.7437
AT5G10110			unknown protein		Lus10022498 [exp]	20.2	0.7405
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	25.7	0.7351
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	31.5	0.7256
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	33.4	0.7120
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	35.6	0.7243

Compare expression of checked genes

Lus10027617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.