Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47970 290 / 1e-98 Nuclear pore localisation protein NPL4 (.1.2) AT3G63000 286 / 2e-96 NPL41 NPL4-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017163 [exp] 321 / 3e-110 AT3G63000 670 / 0.0 NPL4-like protein 1 (.1) Lus10021567 [exp] 318 / 4e-109 AT3G63000 666 / 0.0 NPL4-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213600 [exp] 316 / 3e-108 AT3G63000 596 / 0.0 NPL4-like protein 1 (.1) Potri.014G135590 [exp] 310 / 5e-106 AT3G63000 609 / 0.0 NPL4-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF05021 [flax] [poplar] NPL4 NPL4 family
Representative CDS sequence Show only first row Show all	>Lus10027618 pacid=23151207 polypeptide=Lus10027618 locus=Lus10027618.g ID=Lus10027618.BGIv1.0 annot-version=v1.0 ATGTCAAACCCTAACACTCCCCTCTCCGCTCTTAACCTCATCCACGGTTCCGTCGTCTTCCTAGCCTACGAAGGCGAGATGAACATTCCGGGGCCTGCAG TCTTCCCCGCTGGCTCATTCGGTCGCAAGATGACAATGAAGGATTTGATCGCGAAGCAAATGAGGGTTTCCAGACAGGAGACCCCGCACTCCGAGTCCGT TTCTTTCGATCGCGACTGTGCCAATGCGTTCCAGCACTACGTCAACAAGACCCTGGCCTTCGCGGTGAAGAGGGGCGGGTTTATGTACGGGACTGTATCT GAACAAGGGAAAGTCCAAGTGGATTTCATATACGAGCCCCCTCAGCAAGGTACTGAAGATGTTTTGTTATTTGTAAGGGATTCCAACGAAGAAAAAGCTG TGGATGCTATTGCGACGGGCTTAGGGATGAGGAAGGTTGGGTTCATATTCACACAGACGATAGTCCAGGGCAAGAAAGATTACACGTCGTCTATCAGAGA GCTGCTGCTTGCTGCGGAGCGTCACTCTGAGAGTGAGTTGAAAGAGTGGGTGACTGAAGTTGGAGGTGGGGGAGGATGGTGGAGCTGA
AA sequence Show only first row Show all	>Lus10027618 pacid=23151207 polypeptide=Lus10027618 locus=Lus10027618.g ID=Lus10027618.BGIv1.0 annot-version=v1.0 MSNPNTPLSALNLIHGSVVFLAYEGEMNIPGPAVFPAGSFGRKMTMKDLIAKQMRVSRQETPHSESVSFDRDCANAFQHYVNKTLAFAVKRGGFMYGTVS EQGKVQVDFIYEPPQQGTEDVLLFVRDSNEEKAVDAIATGLGMRKVGFIFTQTIVQGKKDYTSSIRELLLAAERHSESELKEWVTEVGGGGGWWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	0	1
AT1G67170			unknown protein		Lus10030976 [exp]	1.7	0.8317
AT4G25330			unknown protein		Lus10012314 [exp]	3.6	0.7586
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	5.2	0.7735
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	6.8	0.8293
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	8.8	0.7840
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	9.2	0.7950
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	9.8	0.7617
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	10.2	0.7810
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	10.7	0.7885
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	11.2	0.7842

Compare expression of checked genes

Lus10027618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.