Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20520 478 / 9e-172 WAV2 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 48 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G31020 47 / 7e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 44 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G14570 44 / 0.0002 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT3G30380 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G01690 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1) AT4G17150 41 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 41 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011949 [exp] 546 / 0 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 50 / 9e-07 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 51 / 1e-06 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039405 [exp] 48 / 7e-06 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10039125 [exp] 45 / 8e-05 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 44 / 8e-05 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 44 / 0.0002 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 43 / 0.0002 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10022307 [exp] 43 / 0.0003 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145200 [exp] 504 / 0 AT5G20520 511 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G064800 [exp] 496 / 2e-178 AT5G20520 529 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 48 / 4e-06 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 47 / 1e-05 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G000700 [exp] 45 / 5e-05 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G160400 [exp] 45 / 5e-05 AT4G14570 971 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Potri.016G001000 [exp] 45 / 6e-05 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 44 / 9e-05 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 44 / 0.0001 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 44 / 0.0001 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10027619 pacid=23151266 polypeptide=Lus10027619 locus=Lus10027619.g ID=Lus10027619.BGIv1.0 annot-version=v1.0 ATGGTGTCCTACTTCAACGTGTTGCTCTACGGCGTCGGCGGCATAGTGTTCGGCGGAATGGTCTTGCTTGTCGCCTTCCAAGAGCGCCTCGTCTACGTCC CCGTCGTCCCCGGTCTCACCAAGTCCTACCCGATTACTCCCGCCCGCCTCCGTCTCACTTACGAGGACATCTGGCTCAGATCCTCCGATGGCATCCGTCT TCACGCCTGGTTTATTAAGCTCTTCCCGGACTGCAGAGATATTGCTCATCGTCTTGAAATGGTCCGCATAATGTTACAGAAGTTGCAGTGCAATGTGTTC ATGCTTTCTTACCGTGGTTACGGAGAAAGTGATGGGTTTCCTTCCCAACATGGAATTACAAAGGATGCTCAGGTGGGGCATTTGTATTCTGCTGCTTTGG ATCATCTTTGTCAACGGAGTGATATTGATACCTCGAGAATTGTTGTGTTTGGGAGGTCACTTGGGGGTGCTGTTGGGGCCCTACTTACGAAAAACAACCC CGATAAGGTTGCTGGTCTCATACTGGAAAATACATTTACATCCATTCTGGATATGGCAGGAGTTCTCCTTCCATTTCTGAAGTGGGTTATCGGAGGATCT GGGGAAAAAGGTGTTAAAATTCTTAATTTTGTTGTACGTTCTCCTTGGAGCACCATTGACGTAATTGGACAGGTTAAGCGACCAATCCTATTCCTATCAG GTTTGCAAGACGAAATGGTTCCTCCATCCCATATGCAGATGCTTTACGGTAAAGCAGCTGCTCACAACAAGGAATGTTTGTTTGTGGAATTTCCTTCCGG CATGCACATGGATACCTGGTTATCCGGTGGGGATCTTTATTGGGAAACCGTTCAGATGTTCCTCGAAAAATATGCTCCGTGGAATGATGGAACTGATTCT TCTTCTAACATTAGTCATGGTAAGGGTTGGAAAGTCGACTGTTTACCCTTGTGA
AA sequence Show only first row Show all	>Lus10027619 pacid=23151266 polypeptide=Lus10027619 locus=Lus10027619.g ID=Lus10027619.BGIv1.0 annot-version=v1.0 MVSYFNVLLYGVGGIVFGGMVLLVAFQERLVYVPVVPGLTKSYPITPARLRLTYEDIWLRSSDGIRLHAWFIKLFPDCRDIAHRLEMVRIMLQKLQCNVF MLSYRGYGESDGFPSQHGITKDAQVGHLYSAALDHLCQRSDIDTSRIVVFGRSLGGAVGALLTKNNPDKVAGLILENTFTSILDMAGVLLPFLKWVIGGS GEKGVKILNFVVRSPWSTIDVIGQVKRPILFLSGLQDEMVPPSHMQMLYGKAAAHNKECLFVEFPSGMHMDTWLSGGDLYWETVQMFLEKYAPWNDGTDS SSNISHGKGWKVDCLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Lus10027619 [exp]	0	1
					Lus10033006 [exp]	8.7	0.7721
					Lus10008149 [exp]	14.6	0.7420
AT5G22040			unknown protein		Lus10000457 [exp]	18.0	0.7358
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	19.9	0.7478
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	29.3	0.7336
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	39.2	0.7134
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	40.2	0.7152
AT1G47570			RING/U-box superfamily protein...		Lus10020903 [exp]	40.6	0.7094
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	40.9	0.7340
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	45.4	0.7200

Compare expression of checked genes

Lus10027619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.