Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77550 1157 / 0 tubulin-tyrosine ligases;tubulin-tyrosine ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141900 [exp] 1307 / 0 AT1G77550 1188 / 0.0 tubulin-tyrosine ligases;tubulin-tyrosine ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF03133 [flax] [poplar] TTL Tubulin-tyrosine ligase family
Representative CDS sequence Show only first row Show all	>Lus10027620 pacid=23151294 polypeptide=Lus10027620 locus=Lus10027620.g ID=Lus10027620.BGIv1.0 annot-version=v1.0 ATGCCGGGCGCCGCCTCACCTACTCTAACCTACGAGGACTTTGTAAGACTTCACGGGGTCCTACTAGCCGCCTCCGGTCTCCCTCGATCCCTTCACCGCA GGCTGTTCGATAAATTAAGCACAGATAGCTTCGACGGAGGCGCTCACTTCCAAGTGGAACCCTGTGAAGATGGCCGGCAGCGGCGGCTCATCCTCACATC GGAAGCCTTCCCTAAACACTCCGACGTATTCCTGGTGGACCACGCATGGACTTTCCGTCTTCCAGATGCTTATACTCAGCTTCAACAAGTGCCAGGACTT GCTAGGAGGATGGCTGCTCTAATGTGCATCGACGCAGACATAAATTCGTCGGATTCTGAAGAGACAGAAGGCGTTGAAGTAGATATTTCCAAGTTGAATG TCGCAGATTTGATTGAGAAGGAAATTCGTCGTGCCGAAGAAGATACCCATGGTACTGTTAGATGGTTGGAGCTTGAAGAGCTGGACATTGATGATGATGT TCTGATTTCTCTCGATTTGTCTAGCAGATTCCCGGATTTACTGGCGCTTAGCCTTTGTGGAAACAAGCTGAAGAATGTGGATATAGTGGTGCAAGAAGTT AGAAAATTTAAAAGCTTGAAGGCCCTTTGGCTTAATAATAATCCTGTTTCGGAGAAATGTGATGTTCAAATGGGACTGCAAATTCTTGATGGATGTGCTA CACTTGAAATTTACAACTCGAGTTTCACTCCGAATTATGGTGAATGGGCCTTGGCGTTTTGTGGCGGAGTATTTGGGAAAGAAAATCCTGGCTGCAACAA TCAGGGAGAGAGTCCATTGAAGAGTATTACATCTCTTGACCTTTCGGATAGATGTATCCGTTCTCTGGATAACAAGCTATTTTCTTCCACTGAGATGTCC CGGCTTTCAAATTTGAATATTCGAGGGAATCCGTTTGAGGATCCTGTAAGTGAACTGCTGGCACTGTTGAAGAGACTTCCTTCATTACAGTCATTAGAGG TCGACATACCTGGACCACTTGGAGTTAGTGCTGTAGAAATTGCTGAATCTCTTCCAAGTATTCATATACTGAATGGTGTTGAGGCCTCTAAAATACTTGA AACAAGGAATCATGTGATTGACTCGATACTTCAGCCACGTTTTCCAGAGTGGACGGCAGAAGAATCTTTAGTTGACCGAGTTGTAAATGCCATGTGGTTA TACATCATGACCTATAGGCTTGCGGATGAGGAAAAGTTGGACGAATCTTCTGTCTGGTATGTAATGGATGAGCTAGGCTCAGCTTTGAGACACAGCGATG AGCCAAATTTCAGGGTAGCCCCTTTCCTTTACATGCCAGATGGGAAATTGGAGTCAGCCGTGAGCTACTCCATACTATGGCCAATCCAGAATATTGAAAA TGGAGAAGAGTGCACTCGAGATTTCTTACTTGGGATTGGGGAGGAAAAACAACGTTCTGCCAGGCTGACAGCATATTTTCATACGCCACAGAATTACTTT TTTGAAGAATACAAGAAGTTCTGTCAGAATCTGCAATTGAAGAGCTTAACTCCTTTTGAAGAGAAGTCTTCTTCTATAGGAGGCATGTCTCGCGACTATG GAAAACCTTTACGTGTCTTCACTGACATTCCTCAAGTGGAAGAGTTGCTGACACGTCCCGAGTTTGTAATCACGTCTGAACTGAAGGATGCTGATATTAT ATGGACAAGTACACAAGTGGATGAGGAGGTGAAGAAAGAAGCTGGAATAACAGATCGGCAACTGATAAATCAATTTCCATTCGAGGCATGTTTGGTGATG AAACATCATTTGGCAGAGACAGTTCAGAAGGCCTATGGATCTCCTGCATGGTTGCAGCCCACATACAATCTTGAAAACCAGTTGTCCCCACTTATCGGGG ACTACCTCTTGCGGAAGAGAGATGGAACGAACAACCTATGGATCTTAAAACCATGGAACATGGCACGCACCATTGATACAAGTGTTACTGATAATTTATC TGCGATTATCCGTCTAATAGAGACCGGCCCAAAAATATGCCAGAAATATATCGAACATCCATCCTTGTTCCAGGGAAAGAAGTTTGATCTTCGCTACATC GTCCTGGTTCGCAGTATAAGACCTCTGGAAATATTCCTTGCAGATGTTTTCTGGGTAAGGCTGGCAAACAACCCATATACTCTAGCAAAATCGAGCTTGT CGGTCTATGAGACTCATTTTACTGTCATGAACTATCGAGGGGTGATAAACCACAAGAATACTCCAGACTTTGTAAGAGAATACGAGCAGGAGCATATGGT TAAGTGGTTGGATATCCATGAGAGGGTGAAGGCCATGCTACGATCAGTTTTCGAGGCAGCTGCGGGAGTACATCCCGAGATGCAGAGTCCGACGTCTAGG GCGATGTATGGTGTAGATGTAATGATTGATGGCGAATTCCAGCCTAAGTTACTAGAGGTAACCTACTGTCCGGACTGTACAAGAGCATGCAAGTATGATA CAGAGAGTATAGTTGGAGGGAAACATACAATCAAAGGCAGCGACTTCTACAATTATGTGTTTGGTTGCTTATTTTTGGACGAAGAGAAGAACGTTTGCCC ATTGTGA
AA sequence Show only first row Show all	>Lus10027620 pacid=23151294 polypeptide=Lus10027620 locus=Lus10027620.g ID=Lus10027620.BGIv1.0 annot-version=v1.0 MPGAASPTLTYEDFVRLHGVLLAASGLPRSLHRRLFDKLSTDSFDGGAHFQVEPCEDGRQRRLILTSEAFPKHSDVFLVDHAWTFRLPDAYTQLQQVPGL ARRMAALMCIDADINSSDSEETEGVEVDISKLNVADLIEKEIRRAEEDTHGTVRWLELEELDIDDDVLISLDLSSRFPDLLALSLCGNKLKNVDIVVQEV RKFKSLKALWLNNNPVSEKCDVQMGLQILDGCATLEIYNSSFTPNYGEWALAFCGGVFGKENPGCNNQGESPLKSITSLDLSDRCIRSLDNKLFSSTEMS RLSNLNIRGNPFEDPVSELLALLKRLPSLQSLEVDIPGPLGVSAVEIAESLPSIHILNGVEASKILETRNHVIDSILQPRFPEWTAEESLVDRVVNAMWL YIMTYRLADEEKLDESSVWYVMDELGSALRHSDEPNFRVAPFLYMPDGKLESAVSYSILWPIQNIENGEECTRDFLLGIGEEKQRSARLTAYFHTPQNYF FEEYKKFCQNLQLKSLTPFEEKSSSIGGMSRDYGKPLRVFTDIPQVEELLTRPEFVITSELKDADIIWTSTQVDEEVKKEAGITDRQLINQFPFEACLVM KHHLAETVQKAYGSPAWLQPTYNLENQLSPLIGDYLLRKRDGTNNLWILKPWNMARTIDTSVTDNLSAIIRLIETGPKICQKYIEHPSLFQGKKFDLRYI VLVRSIRPLEIFLADVFWVRLANNPYTLAKSSLSVYETHFTVMNYRGVINHKNTPDFVREYEQEHMVKWLDIHERVKAMLRSVFEAAAGVHPEMQSPTSR AMYGVDVMIDGEFQPKLLEVTYCPDCTRACKYDTESIVGGKHTIKGSDFYNYVFGCLFLDEEKNVCPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	1.0	0.9350
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	1.4	0.9345
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	2.4	0.9221
AT1G10840		TIF3H1	translation initiation factor ...		Lus10020427 [exp]	3.2	0.9009
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	4.5	0.9016
AT4G15640			unknown protein		Lus10012810 [exp]	7.1	0.8674
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	8.5	0.8789
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	11.5	0.8718
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10010127 [exp]	14.4	0.8681
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	18.4	0.8664

Compare expression of checked genes

Lus10027620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.