Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29780 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011946 [exp] 129 / 8e-36 AT4G29780 634 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027622 pacid=23151302 polypeptide=Lus10027622 locus=Lus10027622.g ID=Lus10027622.BGIv1.0 annot-version=v1.0 ATGGAAATATCTTCATTCCCATTTTTGAACCCTGAAGAGATTTCCACCTTCTACTCCTTATTCCAGGATATGGATAATAACTTCAACTTCGTTGGCGGAG CTGATAATAATAGCACCTTTAGTTTCGGAGGAGGAGACGGTGACGGAAACAATGGTTCCAAGAAGCGCAGAAGGAAAGACGGCGGCGATGACGGCGACGA ATCCAAGAATAATAAGAAGAAGAATGCTACGGCGGCGGCGACCAAGGGTTTCCTCAGCTCTCTCATGCTATTAGACGAGGAAGAGAAGCAAGAGCATAAT CAGTACGTCGTTGAGTCGCAGCTAGACAACTCCCTCCTCGATTCGAATTACGACCAAAAGGTGACTAGCAAGCTGGAAAGAAACTGCTTCTATGGTTGA
AA sequence Show only first row Show all	>Lus10027622 pacid=23151302 polypeptide=Lus10027622 locus=Lus10027622.g ID=Lus10027622.BGIv1.0 annot-version=v1.0 MEISSFPFLNPEEISTFYSLFQDMDNNFNFVGGADNNSTFSFGGGDGDGNNGSKKRRRKDGGDDGDESKNNKKKNATAAATKGFLSSLMLLDEEEKQEHN QYVVESQLDNSLLDSNYDQKVTSKLERNCFYG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29780			unknown protein		Lus10027622 [exp]	0	1
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	1.0	0.9679
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	2.4	0.9600
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	4.2	0.9582
AT3G03280			unknown protein		Lus10013490 [exp]	4.5	0.9579
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	4.6	0.9468
AT4G34950			Major facilitator superfamily ...		Lus10025053 [exp]	4.7	0.9200
AT4G29780			unknown protein		Lus10011946 [exp]	5.5	0.9558
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	5.5	0.9329
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	7.1	0.9150
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	7.4	0.9403

Compare expression of checked genes

Lus10027622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.