Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29810 488 / 2e-173 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 444 / 5e-156 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G56580 391 / 2e-135 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT5G40440 241 / 1e-74 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT1G51660 188 / 5e-56 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 181 / 1e-53 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G73500 178 / 9e-53 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 166 / 2e-48 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT3G15220 147 / 1e-38 Protein kinase superfamily protein (.1) AT1G32320 136 / 5e-37 ATMKK10 MAP kinase kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011945 [exp] 529 / 0 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10012938 [exp] 395 / 4e-137 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10034986 [exp] 388 / 8e-134 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10022265 [exp] 243 / 3e-75 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10001137 [exp] 239 / 7e-75 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10035764 [exp] 177 / 8e-52 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 171 / 3e-51 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10036915 [exp] 141 / 3e-36 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037070 [exp] 140 / 3e-36 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050800 [exp] 568 / 0 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 525 / 0 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 415 / 1e-144 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.001G345500 [exp] 237 / 3e-73 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Potri.015G030700 [exp] 186 / 9e-56 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 180 / 5e-53 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 178 / 9e-53 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.008G009800 [exp] 175 / 3e-51 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G049500 [exp] 155 / 5e-44 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 153 / 4e-43 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027623 pacid=23151278 polypeptide=Lus10027623 locus=Lus10027623.g ID=Lus10027623.BGIv1.0 annot-version=v1.0 ATGAACAAGAGGACTTTGAACCCCAACCTCAACCTTAAGCTCTCTCTTCCTCCTCCCGATGAAATCGCCTTCGCCAAGTTCCTAACCCAAAGTGGGACTT TTATGGATGGTGATCTGCTCGTCAATCGCGATGGCGTTCGCATTGTTACTCAAACTGAACCTGATGCTCCACCTCCGATTCAGCCTGCCGACAATCAGAT GAGTCTAGCAGATATAGACACTGTGAAGGTCATCGGCAAGGGAAATGGAGGCATTGTTCAGCTGGTGCAGCACAAGTGGACCGGCCAGTTTTTCGCATTG AAGAACTCATTCAACAAACTGTCAGTGTTAGGTTGTAGAAACTGCTTGTTTCCAGCAGCCTACTTGCCAGGGAAAGAACTTGAGAAACTGCTAACTAATC AGTTCCATCTCCATGTCATCCAAATGAACATACTGGAGTCGGCTCGTAGGGCAATTGCCCAGGAACTGAAAATTAATCAATCAGCACAATGTCCCAATGT TGTTATGTGCTATCAATCTTTCTATGACAACGGTGCTGTTTCCATCATCTTAGAGTACATGGATGGTGGTTCCCTGGCAGATTTTCTGAGAAAAGTTAGA ACAATTCCTGAACCATACCTTGCAGCTATCTGTAAGCAGGTATTAAAAGGTTTGTTGTATCTTCATCATGAGAAACATGTTATCCACAGAGACATGAAGC CTTCCAATTTGTTGATAAATCATAGAGGAGAGGTCAAAATCACTGACTTTGGCGTGAGTGCAATTATGCAAAATACCTCAGGCCAGGCAAATACGTTTGT TGGCACATACAACTATATGTCCCCGGAGAGAATTAGTGGAGGACAATATGGCTATAAAAGTGATATTTGGAGCTTGGGGTTAGTGTTGATGGAATGCGCA ACGGGCCATTTTCCATATTCTCCTCCAGAGAAAGACGAAGGATGGACTAATGTATACGAGCTTATGGAAGCCGTCGTCGAGCAACCGCCGCCTTATTTGC CTTCTGACCAATTTTCTCCAGAATTTTGCTCATTTATATCTGCATGCATTCATAAAGACCCAAAAGCTAGACTGTCAGCCCTCGAACTTATGGCACATCC ATTTATGAACTTGTACGAAGACCTTCACGTAGATCTCTCATCTTACTTCAAGAATGTGGGTTCACCTCTTGCATCCTTTTGA
AA sequence Show only first row Show all	>Lus10027623 pacid=23151278 polypeptide=Lus10027623 locus=Lus10027623.g ID=Lus10027623.BGIv1.0 annot-version=v1.0 MNKRTLNPNLNLKLSLPPPDEIAFAKFLTQSGTFMDGDLLVNRDGVRIVTQTEPDAPPPIQPADNQMSLADIDTVKVIGKGNGGIVQLVQHKWTGQFFAL KNSFNKLSVLGCRNCLFPAAYLPGKELEKLLTNQFHLHVIQMNILESARRAIAQELKINQSAQCPNVVMCYQSFYDNGAVSIILEYMDGGSLADFLRKVR TIPEPYLAAICKQVLKGLLYLHHEKHVIHRDMKPSNLLINHRGEVKITDFGVSAIMQNTSGQANTFVGTYNYMSPERISGGQYGYKSDIWSLGLVLMECA TGHFPYSPPEKDEGWTNVYELMEAVVEQPPPYLPSDQFSPEFCSFISACIHKDPKARLSALELMAHPFMNLYEDLHVDLSSYFKNVGSPLASF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	0	1
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	1.4	0.8398
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	6.0	0.7547
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	7.2	0.7635
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	15.0	0.7242
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	15.5	0.7555
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	16.4	0.6987
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	20.5	0.7246
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	23.2	0.6649
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	23.7	0.6943
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	25.7	0.7245

Compare expression of checked genes

Lus10027623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.