Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29820 204 / 1e-66 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) AT4G25550 140 / 5e-42 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011944 [exp] 279 / 2e-96 AT4G29820 207 / 1e-67 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10014987 [exp] 147 / 1e-44 AT4G25550 383 / 8e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10038867 [exp] 99 / 4e-25 AT4G25550 245 / 1e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G146400 [exp] 214 / 1e-70 AT4G29820 292 / 2e-101 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Potri.015G143300 [exp] 148 / 4e-45 AT4G25550 385 / 9e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.012G140301 [exp] 82 / 4e-20 AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027624 pacid=23151210 polypeptide=Lus10027624 locus=Lus10027624.g ID=Lus10027624.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAAGCTCCCATAGCCACAACCAGCAGTGAAGATGAAGAGAGGAGTAATAGTAGTAGTGTGGTGGTGGAGATATATCCTCTGAGCAGCTACT ACTTCGGCTCCAAGGAATCTCTTCCTACCAAGGATCACTGCACTAGTACTCTTGCTCAAAGGATCAACTCCAAGTACAGTTACAGGGGATTCAGGACTTG CGTCCAAGCTGTCATCCTGGTGGAGCTGTTCAAACACCCGCATGTATTAATATTGCAAGAGAGGAACTCATCCTTGAGGCTCCCAGGGGGACGCCTTAGA CCTGCTGAAACTGATGTTGATGGTTTGAAGCGCAAGCTATCAACGAAGCTCTCACTCTCGCTGGATGATCATGAAACTAATTGGCAGATTGGGGAATGCC TTGGCGTGTGGTGGAAAACAGACATTGAATGCACAAAGCTGTACCTTGTGAGGTTGCAGGGGAGTCTCAGCTTCATCGTACCTAAAAATCTCAAGTTGCT GGCCGTGCCGCTGTGCCAGCTGCATCAAAATCACAAGACGTATGGAGAGATAATAGCAGGAGTGCCAAAGATGCTATCTAATGTCTCCTTCAACACTCTT CATTAG
AA sequence Show only first row Show all	>Lus10027624 pacid=23151210 polypeptide=Lus10027624 locus=Lus10027624.g ID=Lus10027624.BGIv1.0 annot-version=v1.0 MGREAPIATTSSEDEERSNSSSVVVEIYPLSSYYFGSKESLPTKDHCTSTLAQRINSKYSYRGFRTCVQAVILVELFKHPHVLILQERNSSLRLPGGRLR PAETDVDGLKRKLSTKLSLSLDDHETNWQIGECLGVWWKTDIECTKLYLVRLQGSLSFIVPKNLKLLAVPLCQLHQNHKTYGEIIAGVPKMLSNVSFNTL H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10027624 [exp]	0	1
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	3.7	0.9365
					Lus10008051 [exp]	4.6	0.9379
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10034217 [exp]	5.7	0.9122
AT3G19990			unknown protein		Lus10038848 [exp]	12.4	0.9223
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	13.4	0.9266
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10010239 [exp]	17.1	0.8864
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029185 [exp]	24.2	0.8996
					Lus10018670 [exp]	26.3	0.8969
AT5G41810			unknown protein		Lus10003901 [exp]	26.4	0.9304
AT2G39855			unknown protein		Lus10004678 [exp]	26.6	0.9304

Compare expression of checked genes

Lus10027624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.