Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26060 127 / 1e-38 Ribosomal protein L18ae family (.1) AT5G57060 124 / 3e-37 unknown protein AT1G54217 88 / 4e-23 Ribosomal protein L18ae family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011943 [exp] 270 / 7e-94 AT4G26060 150 / 4e-47 Ribosomal protein L18ae family (.1) Lus10042485 [exp] 40 / 9e-05 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10026180 [exp] 42 / 0.0001 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G146300 [exp] 170 / 4e-55 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 165 / 5e-53 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1) Potri.001G198700 [exp] 96 / 2e-26 AT4G26060 107 / 3e-31 Ribosomal protein L18ae family (.1) Potri.003G044400 [exp] 95 / 5e-26 AT5G57060 103 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027625 pacid=23151257 polypeptide=Lus10027625 locus=Lus10027625.g ID=Lus10027625.BGIv1.0 annot-version=v1.0 ATGCTGGCTGAAAGAATCTCAACTGAACCACTTATGGACAGAAATGCTAGCTTTGAGGAGGCCAAAAGCTTGAGGAATGGAGCTGAGTTGGTAAAATCTG CCAACGAAAAACCTATTGATCGTCTCAGACCAGCTGCTAGGCACAATTCAGTATTCAGAGGCCAACCATTAGCATCAGAGTTATCAGGGCACGAAAAGGG GAAGTACACCCTGATAAGAGATCCTGAGGATTTCATAGCAGGAGGTGCATTTGATAAGCCCCTTCCTTGCTTTGGCTGTGGAATAGGGTGGTTTTCCTTT CTTTCTGGGTTCTTGTTCCCACTAATGTGGTACTATGCCACAATCCTGTATTTCGGAAACTACTACCGCAAAGATCCGAGGGCAAGAGCGGGCCTTGCTG CAGCAGCAATTGCAGCAATGGGTTGCTCGGTTGTGATGGTGTTCATACTTGCTTACTGTTTTCTGTTTTGA
AA sequence Show only first row Show all	>Lus10027625 pacid=23151257 polypeptide=Lus10027625 locus=Lus10027625.g ID=Lus10027625.BGIv1.0 annot-version=v1.0 MLAERISTEPLMDRNASFEEAKSLRNGAELVKSANEKPIDRLRPAARHNSVFRGQPLASELSGHEKGKYTLIRDPEDFIAGGAFDKPLPCFGCGIGWFSF LSGFLFPLMWYYATILYFGNYYRKDPRARAGLAAAAIAAMGCSVVMVFILAYCFLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035302 [exp]	1.4	0.9575
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	1.4	0.9618
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	3.0	0.9532
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10010465 [exp]	3.5	0.9499
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	4.2	0.9574
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	5.0	0.9556
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	5.7	0.9533
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10038219 [exp]	6.5	0.9493
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	7.7	0.9556
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	8.1	0.9526

Compare expression of checked genes

Lus10027625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.