Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19385 190 / 8e-59 zinc ion binding (.1) AT2G19380 124 / 2e-31 RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011942 [exp] 463 / 7e-166 AT2G19385 241 / 4e-79 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G146200 [exp] 251 / 3e-82 AT2G19385 272 / 7e-91 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF08790 [flax] [poplar] zf-LYAR LYAR-type C2HC zinc finger
Representative CDS sequence Show only first row Show all	>Lus10027626 pacid=23151213 polypeptide=Lus10027626 locus=Lus10027626.g ID=Lus10027626.BGIv1.0 annot-version=v1.0 ATGGTGTGGTTTCAGTGTGATGACTGTGGGGAGGAAGTGAAGAAACCCAAGCTTTCTAACCACTTCCGTATTTGCTCCGCTTCTAAGCTATCTTGCATTG ATTGTGGGGTGACATTCGGCCCAGACAGCGTCCAGGGCCATACTCAATGTATTACAGAAGCTGAAAAGTATGGTCCTAAAGGAGTGGCGAGGCCATCTGT AAATGGAATAATCCCTAAATCCAAGGATTCAAAGCTAAAACCTGATGTTGATATTAATGTTGGATTGTCTCTACGCCCACCATGGACTTGCAGTCTTTGT AATAGCAAGGCTACTAGTAAGCAGGCTCTACTTTTGCATGCTGATGGAAAAAAGCATCGAGCAAAGGCCAGGGCTTTTCATGCTGGTAAGCAACCTAAAC ATATAGAAGAAAATGTGCAAGAGGCAGTAGTCCCGTCAGATGGCAGCGGAGTTGTTTCTAAAGGCTTGGAGGATGAAAAAGCACAAGATAGAGCTACATC TGACGGTTTAAAACTGGAGGATGGAGTGTTGTCATCAGAGAAGAAGCGGAAACTAGATGTATCAGATAGTGATGGTAAAGTGAAAAAGGTTAAGGGTGAT CAAGTTCAGGTTGGAAGTGTTGAAATGGATGAAAGTAATGGTAAATTGAAGAAAGTCAAACCAAACGGGACCAAGAATGATAAGGAGTTGCATGGGCAGA CCGAGAAGAAGATCAAGTGGAAGAAGTTGATTAAGGCAGCCCTGAAATCTAATCCAGATGGAGGGATGAAATTGAGGAAACTGAAAAACCAAGTCCAGAA ATTGCTGCAGGAATCTGGGGAAGTCGTTGATGAAGATGAATTGGGCAATATTCTCGAGCAAAAGGTTAGTTCGAACTCCAGATTCACACTTGATGGCAAG TACGTCCGGCTAGCTGCGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10027626 pacid=23151213 polypeptide=Lus10027626 locus=Lus10027626.g ID=Lus10027626.BGIv1.0 annot-version=v1.0 MVWFQCDDCGEEVKKPKLSNHFRICSASKLSCIDCGVTFGPDSVQGHTQCITEAEKYGPKGVARPSVNGIIPKSKDSKLKPDVDINVGLSLRPPWTCSLC NSKATSKQALLLHADGKKHRAKARAFHAGKQPKHIEENVQEAVVPSDGSGVVSKGLEDEKAQDRATSDGLKLEDGVLSSEKKRKLDVSDSDGKVKKVKGD QVQVGSVEMDESNGKLKKVKPNGTKNDKELHGQTEKKIKWKKLIKAALKSNPDGGMKLRKLKNQVQKLLQESGEVVDEDELGNILEQKVSSNSRFTLDGK YVRLAAKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	0	1
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	2.6	0.9083
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	3.5	0.8752
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	3.6	0.8163
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	4.5	0.8784
AT4G38370			Phosphoglycerate mutase family...		Lus10014434 [exp]	6.9	0.8005
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	8.9	0.8097
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	9.8	0.8477
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	10.1	0.8465
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	12.0	0.8476
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	13.4	0.8195

Compare expression of checked genes

Lus10027626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.