Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26100 677 / 0 CKL1, CK1 casein kinase 1 (.1) AT1G72710 663 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT5G57015 657 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 590 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 539 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 538 / 0 CKL7 casein kinase I-like 7 (.1) AT3G23340 536 / 0 CKL10 casein kinase I-like 10 (.1) AT4G28540 519 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G14340 518 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT1G04440 512 / 6e-180 CKL13 casein kinase like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011940 [exp] 900 / 0 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10006018 [exp] 652 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006879 [exp] 652 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10037621 [exp] 649 / 0 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10033913 [exp] 547 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022029 [exp] 542 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 538 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 535 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 529 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065900 [exp] 798 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 786 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 704 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 692 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.005G226900 [exp] 540 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 540 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 536 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 534 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 522 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 504 / 2e-177 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027628 pacid=23151194 polypeptide=Lus10027628 locus=Lus10027628.g ID=Lus10027628.BGIv1.0 annot-version=v1.0 ATGGAGCCTCGCGTTGGCAATAAGTTTCGGCTTGGTCGTAAGATCGGCAGCGGTTCATTTGGGGAGATCTATCTTGGTACCAATATTCAGACCAACGAGG AGGTTGCTATTAAACTTGAAAATGTGAAGACAAAGCATCCACAGTTGTTGTATGAATCCAAGTTATACAGAATCTTACAGGGAGGAACTGGTATTCCAAA TGTGAGGTGGTTTGGTGTTGAAGGAGACTACAATGTTCTGGTGATGGATTTGCTTGGACCTAGTCTTGAAGACCTATTTAATTTCTGCAGTAGGAAACTC TCTTTGAAGTCTGTTCTTATGCTCGCAGATCAGATGATCAATCGAGTTGAATTTTTTCACTCCAAGTCATTCTTACATCGGGATATCAAGCCAGACAATT TTCTTATGGGTCTTGGGAGACGTGCAAACCAGGTATACATCATTGACTTTGGTTTGGCTAAGAAGTATCGAGATAGCTCAACTCATCAGCACATTCCATA CAGGGAGAACAAAAACTTGACTGGCACTGCTAGATATGCAAGCATGAATACTCATCTTGGAATTGAGCAAAGCAGAAGGGATGATCTGGAGTCTCTTGGT TATGTTCTTATGTACTTCTTAAGGGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGGCACAAAGAAACAGAAGTATGATAAAATCAGCGAAAAGAAAGTTT CTACTTCAATTGAGGCAAGACATCATGAGGCCTTATGTCGGGGTTATCCAAGTGAATTTGCTTCATACTTTCACTACTGCCGTTCATTACGGTTTGATGA TAAGCCTGATTATGGATACCTGAAAAGAATATTTCGTGATCTCTTCATTCGAGAAGGCTTCCAGTTTGATTATGTCTTTGACTGGACAATATTGAAGTAT CAGCAATCACAGCTGGCTAATCCTCCAGCACGTGGACTGGCCCCTGGTGTTGGAACTAGTTCTGGGATGCCTCCTATGGCTAGTGTAGATAGACAGACAG CGGAAGAAGCACGACCCATTGTTCAGTCAACGGATCCCTCACGCCGAAGATTCTCTGGACCAATATTAAATACAGGAAGTCATGCTAAACAGAAGAGTCC GATTAATAATGATTCCCCTAGTGCAATCGACCCAATTTTACCAAGCTCCAATTTCTTGGGTAGATCGAGTGGATCCTCGCGGCGTGCTGCAGCTGTTTCC AGCAGCCGCGATGTGTTTGGTGGAAGCGAGATAGAGCCCCAGCGCTCTCGCCAAACTGATTCAGCAAACAATGGAAGCATACCAAACCTTTTGGGTGGTC AAAGAAGCCCCACTTTTGGTTCGTCAGAGCCTAGACGCACTGCATCTGCTAGAAATACTGCGCACGTAAAGACATTTGAATCTGCCCTCAAAGGAATCGA GGGTCTGAGTTTTGACAGTAATGAGAAGGCTCAGTACTAG
AA sequence Show only first row Show all	>Lus10027628 pacid=23151194 polypeptide=Lus10027628 locus=Lus10027628.g ID=Lus10027628.BGIv1.0 annot-version=v1.0 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKL SLKSVLMLADQMINRVEFFHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIEARHHEALCRGYPSEFASYFHYCRSLRFDDKPDYGYLKRIFRDLFIREGFQFDYVFDWTILKY QQSQLANPPARGLAPGVGTSSGMPPMASVDRQTAEEARPIVQSTDPSRRRFSGPILNTGSHAKQKSPINNDSPSAIDPILPSSNFLGRSSGSSRRAAAVS SSRDVFGGSEIEPQRSRQTDSANNGSIPNLLGGQRSPTFGSSEPRRTASARNTAHVKTFESALKGIEGLSFDSNEKAQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	0	1
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	1.7	0.8607
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	4.9	0.8378
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	10.5	0.8320
AT3G15160			unknown protein		Lus10040027 [exp]	10.8	0.8304
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	11.0	0.7801
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	16.6	0.7868
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	18.4	0.8193
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	19.1	0.7565
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	19.3	0.8226
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	25.5	0.7648

Compare expression of checked genes

Lus10027628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.