Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19430 395 / 2e-137 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) AT3G49660 61 / 3e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 56 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 53 / 2e-07 TAF5 TBP-associated factor 5 (.1) AT3G16650 52 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G04140 52 / 4e-07 Transducin family protein / WD-40 repeat family protein (.1.2) AT5G16750 50 / 1e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G15900 50 / 1e-06 PRL1 pleiotropic regulatory locus 1 (.1) AT4G02730 50 / 2e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G51980 48 / 7e-06 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011938 [exp] 689 / 0 AT2G19430 422 / 6e-148 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) Lus10024447 [exp] 62 / 5e-10 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 60 / 1e-09 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10015340 [exp] 58 / 4e-09 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 57 / 9e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 56 / 2e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017890 [exp] 51 / 8e-07 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10006511 [exp] 49 / 3e-06 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 49 / 4e-06 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001500 [exp] 508 / 0 AT2G19430 454 / 1e-160 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) Potri.005G148500 [exp] 64 / 3e-11 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 62 / 1e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 59 / 3e-09 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 59 / 4e-09 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 56 / 2e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 50 / 9e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G156900 [exp] 50 / 1e-06 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.010G012800 [exp] 48 / 6e-06 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.015G049500 [exp] 47 / 2e-05 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027630 pacid=23151248 polypeptide=Lus10027630 locus=Lus10027630.g ID=Lus10027630.BGIv1.0 annot-version=v1.0 ATGCGCATGGACGCGACGAACTGGGACGAGGTAGCCTATAGACATAGCATCTTGAGAGAACGAGCTGCCGAAACCCTAAACGTCTTTAGGACGGCATGGG CGCCTTCTTCAGATTTGATCCCCGATGCCATCGTCGTAGCCTCCAGTGACGGGTCGATCAGTTCGTACTCTATATCCTCATGCGCCTCCAAAATGCCACT GGGTTTCGGCTCTGCAATGGCTCCTCAGGTTGCGCCTACTGCCTTTGTTCAAGGCCATGATGGACCAGCTTATGATGTCAAATTTTATGGCAGCGGCGAA GATGCCTTATTGCTGAGTTGTGGTGATGATGGTCGGATTCGAGGATGGAAATGGAAAGAATTCATCGAATCTGAGGTTCCAATTTCATTGCAAGGAAAGC ATGTGAAGTCAGTGGTTGACCTTGTGAATCCCCAGCAAAGAGGTCCATGGGGTGCTCTTTCGCCGGTCCCTGAAACCAATGCTATTGCTTTAGGCACTAA GGACGCTTCCATCTTTTCTGCTGCTGGTGATTCTTGTGCCTATTGCTGGGATGTGGAGACGTGCAAGATCAAAATGGTTTTCAAGGGGCACTTGGATTAT TTGCACTGTATAGTTGGCCCCAACTCTGCCAATCAGATTATAACTGGCTCAGAAGATGGAACAGCAAGATTTTGGGATTGCAATAGTGGGAAGTGTGTCA GAGTAATTGACCCGAGGAAGGATAAGAAGTTAAGAAGACCTTCTATGCCTATTAGATGCATTGCACTTGATGCAAGTGACAACTGGCTGGCTTGTAGCAG CGGTCAAAGTTTATCAGTTTGGAACTTGCATGCTTCTGAGTGTGTTTCAAGGACTTCTACCAGTGGTTCCATGCAGGATATAATATTCGACTACAGTCAA GTATTAGCTGTTGGGTCGAAACCTTTTGTCAGTCGATTTGACCTAGATGGAAAGATTCTTTCACAGATACCATGTGCTCCTCAGTCAGCATTCTCCGTCT CATTACATCCATCGAGGCTGACAGCAGTTGGAGGTTATGGTGGTGTTGTAGATGTGATATCCCAGGTTCAAAGTCACTATTGCACATTCCGCTGCAGCCG GGGGTGA
AA sequence Show only first row Show all	>Lus10027630 pacid=23151248 polypeptide=Lus10027630 locus=Lus10027630.g ID=Lus10027630.BGIv1.0 annot-version=v1.0 MRMDATNWDEVAYRHSILRERAAETLNVFRTAWAPSSDLIPDAIVVASSDGSISSYSISSCASKMPLGFGSAMAPQVAPTAFVQGHDGPAYDVKFYGSGE DALLLSCGDDGRIRGWKWKEFIESEVPISLQGKHVKSVVDLVNPQQRGPWGALSPVPETNAIALGTKDASIFSAAGDSCAYCWDVETCKIKMVFKGHLDY LHCIVGPNSANQIITGSEDGTARFWDCNSGKCVRVIDPRKDKKLRRPSMPIRCIALDASDNWLACSSGQSLSVWNLHASECVSRTSTSGSMQDIIFDYSQ VLAVGSKPFVSRFDLDGKILSQIPCAPQSAFSVSLHPSRLTAVGGYGGVVDVISQVQSHYCTFRCSRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	0	1
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	2.0	0.9204
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	2.8	0.9057
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015717 [exp]	3.3	0.8841
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	5.5	0.8945
AT3G45830			unknown protein		Lus10018121 [exp]	6.0	0.8954
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	7.5	0.8930
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	7.9	0.8960
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	8.1	0.8275
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	10.4	0.8726
AT2G30120			unknown protein		Lus10026389 [exp]	10.5	0.8539

Compare expression of checked genes

Lus10027630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.