Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43360 69 / 2e-15 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43350 67 / 4e-15 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43370 67 / 4e-15 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT3G54700 62 / 3e-13 PHT1;7 phosphate transporter 1;7 (.1) AT2G38940 62 / 4e-13 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT2G32830 61 / 9e-13 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT4G08878 60 / 2e-12 Major facilitator superfamily protein (.1) AT5G43340 56 / 4e-11 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G76430 47 / 5e-08 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 46 / 2e-07 PHT1;8 phosphate transporter 1;8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027575 [exp] 117 / 8e-33 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 76 / 7e-18 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10012860 [exp] 75 / 1e-17 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10022548 [exp] 67 / 5e-15 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1) Lus10016635 [exp] 66 / 2e-14 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10014754 [exp] 62 / 7e-13 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10003560 [exp] 61 / 1e-12 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 61 / 1e-12 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10011826 [exp] 57 / 2e-11 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022800 [exp] 87 / 4e-22 AT5G43360 598 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Potri.019G061900 [exp] 77 / 2e-18 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Potri.010G071500 [exp] 64 / 5e-14 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 62 / 3e-13 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 61 / 7e-13 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G071600 [exp] 61 / 9e-13 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 61 / 1e-12 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G072000 [exp] 60 / 2e-12 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 60 / 2e-12 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 58 / 1e-11 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027631 pacid=23151198 polypeptide=Lus10027631 locus=Lus10027631.g ID=Lus10027631.BGIv1.0 annot-version=v1.0 ATGTCGGAGTACGCCAACAAGAAAACCCGCGGCCATTTCATCGCGACAGTCTTCGCGATGCAAGGCGTGGCGATAGTGTTTGTCGGATTGGTCTCCATGA TCCTCTCCAGAATCTTCCTCGTCGAAAATCCCGCCCCTCCATTCAACGAGAACGAGATCCTCTCCACCCAGCTGCAAGGCGACGAGCTCTGA
AA sequence Show only first row Show all	>Lus10027631 pacid=23151198 polypeptide=Lus10027631 locus=Lus10027631.g ID=Lus10027631.BGIv1.0 annot-version=v1.0 MSEYANKKTRGHFIATVFAMQGVAIVFVGLVSMILSRIFLVENPAPPFNENEILSTQLQGDEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43370		PHT1;2, APT1, P...	ARABIDOPSIS PHOSPHATE TRANSPOR...		Lus10027631 [exp]	0	1
					Lus10002240 [exp]	2.8	0.7830
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	5.3	0.7976
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	5.3	0.7449
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	7.5	0.7976
AT4G04650			RNA-directed DNA polymerase (r...		Lus10008147 [exp]	7.9	0.6971
					Lus10000380 [exp]	9.2	0.7976
					Lus10010383 [exp]	10.6	0.7976
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	11.8	0.7968
					Lus10009632 [exp]	13.0	0.7947
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	14.0	0.7837

Compare expression of checked genes

Lus10027631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.