Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19520 800 / 0 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 689 / 0 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G16780 199 / 9e-59 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 194 / 2e-56 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 192 / 5e-56 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19540 106 / 2e-24 Transducin family protein / WD-40 repeat family protein (.1) AT3G49660 71 / 2e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 63 / 1e-10 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 62 / 4e-10 TAF5 TBP-associated factor 5 (.1) AT2G32950 57 / 2e-08 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011936 [exp] 667 / 0 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 201 / 4e-59 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 199 / 2e-58 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033460 [exp] 186 / 2e-53 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 183 / 2e-52 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 166 / 3e-46 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 147 / 3e-39 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025341 [exp] 102 / 6e-23 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 99 / 7e-22 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151800 [exp] 794 / 0 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 793 / 0 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 722 / 0 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 214 / 5e-64 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 205 / 6e-61 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 187 / 4e-54 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 187 / 6e-54 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G094000 [exp] 106 / 1e-24 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 106 / 2e-24 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 71 / 4e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10027632 pacid=23151276 polypeptide=Lus10027632 locus=Lus10027632.g ID=Lus10027632.BGIv1.0 annot-version=v1.0 ATGGAAGGTCAAGTCCCCAAGAAGCGAGGCCGGAAGCCAAAGTCCAAGGACGAGAAAGACCAGCAGCAGCAAGCCAAAATGAAGGAAGGGAAGCGAGGCC AGCACGCTGCTTCAGTTGACGAGAAGTACACTCAGTGGAAGTCTCTCGTTCCAGTTCTCTACGACTGGCTTGCTAACCACAACCTCGTCTGGCCTTCCCT CTCTTGCCGGTGGGGGCCGCAGCTTGAGCAAGCTACTTACAAGAATCGCCAACGCCTCTACCTCTCCGAGCAGGCGGGCTTCTCTTATTTGACTGATGGC AGTGTTCCAAACACCCTTGTCATTGCGAATTGTGAGGTTGTCAAGCCAAGAGTCGCTGCTGCCGAGCACATTTCTCAGTTTAATGAAGAAGCACGATCTC CATTTGTGAAGAAGTACAAGACCATCATACATCCTGGAGAGGTCAACAGGATTAGGGAGCTTCCACAGAATAGCCGCATAGTGGCTAACTATACCCACAG ACCGGAAGTTCTTATATGGGATGTAGAAACACAACCAAATCGTCATGCTGTTCTTGGAGCTACAAATTCTCGGCCTGATCTGATTTTGACTGGTCACCAA GATAATGCAGAATTTGCCCTCGCAATGTGCCCAACTGAACCCTTTGTACTCTCTGGAGGGAAGGATAAGTCGGTAGTTTTGTGGAGTATCCAGGACCATA TAACATCCTCTGCTTCTGACCCAGCTTCAGGAAAGTCCCCAGGATCTGGTGGATCCATCATTAAAAGAAGTGAAGGGAATGATAAAGCATCAGATGGACC AACTGTTGGACCAAGAGGGATTTATCAGGGTCATGAGGATACAGTGGAAGACGTGGCATTCAGTCCGTCCAGTGCGCAGGAGTTCTGTAGTGTAGGAGAT GATGCTTGCCTCATTCTTTGGGATGCTCGAGTTGGCACTGGCCCTGTTGTCAAGGTTGAAAAAGCTCACGGTGCTGATCTTCACTGTGTTGATTGGAATC CACATGACAACAACTTTATTCTGACTGGTTCTGCAGACAATTCTGTTCGCATGTTTGACCGGCGAAATCTCACTAGTAATGGTGTTGGCTCACATGTCTA CAAATTTGAGGGTCATAGTGCTGCTGTTCTCTGTGTGCAGTGGTGTCCTGACAAGGCATCAGTCTTTGGAAGCTCTGCTGAGGATGGGCTCCTAAACATC TGGGATTATGATGTGATAGGTAAAGAGACGGAGGTGAAAGCCCCAGGGGCTCCGGCAGGATTGTTTTTCCAGCATGCTGGACATAGGGACAAAGTTGTGG ACTTCCACTGGAACGCTCATGATCCTTGGACCATAGTTAGTGTATCTGATGACTGTGAGACTAGCGGGGGAGGTGGGACATTACAGATATGGAGGATGAG CGATTTGCTGTATAGGCCAGAGAAGGAAGTATTGGAGGAGCTTCAGAACTTCAAAACTCATGTGAGTCAATGCACAGCAAAGAATTGA
AA sequence Show only first row Show all	>Lus10027632 pacid=23151276 polypeptide=Lus10027632 locus=Lus10027632.g ID=Lus10027632.BGIv1.0 annot-version=v1.0 MEGQVPKKRGRKPKSKDEKDQQQQAKMKEGKRGQHAASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQAGFSYLTDG SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSRIVANYTHRPEVLIWDVETQPNRHAVLGATNSRPDLILTGHQ DNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITSSASDPASGKSPGSGGSIIKRSEGNDKASDGPTVGPRGIYQGHEDTVEDVAFSPSSAQEFCSVGD DACLILWDARVGTGPVVKVEKAHGADLHCVDWNPHDNNFILTGSADNSVRMFDRRNLTSNGVGSHVYKFEGHSAAVLCVQWCPDKASVFGSSAEDGLLNI WDYDVIGKETEVKAPGAPAGLFFQHAGHRDKVVDFHWNAHDPWTIVSVSDDCETSGGGGTLQIWRMSDLLYRPEKEVLEELQNFKTHVSQCTAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	0	1
					Lus10037590 [exp]	4.4	0.9623
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Lus10036319 [exp]	4.5	0.9493
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	5.5	0.9554
AT4G31880			unknown protein		Lus10018332 [exp]	5.7	0.9464
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	7.7	0.9541
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	8.0	0.9332
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	8.5	0.9402
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	8.7	0.9140
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10033915 [exp]	9.2	0.9439
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	9.7	0.9388

Compare expression of checked genes

Lus10027632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.