Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37790 138 / 4e-40 HD HAT22 Homeobox-leucine zipper protein family (.1) AT5G06710 130 / 1e-36 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT2G22800 129 / 1e-36 HD HAT9 Homeobox-leucine zipper protein family (.1) AT3G60390 128 / 4e-36 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G47370 126 / 1e-35 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G16780 125 / 2e-35 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT4G17460 122 / 5e-34 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 120 / 4e-33 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT2G01430 106 / 5e-28 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 103 / 1e-27 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011935 [exp] 223 / 3e-74 AT4G37790 142 / 1e-41 Homeobox-leucine zipper protein family (.1) Lus10021064 [exp] 134 / 9e-39 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 134 / 8e-38 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 130 / 2e-36 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 130 / 2e-36 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 129 / 1e-35 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10040175 [exp] 127 / 1e-35 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 127 / 2e-35 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 127 / 2e-35 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133100 [exp] 147 / 1e-44 AT5G06710 163 / 3e-49 homeobox from Arabidopsis thaliana (.1.2) Potri.006G071600 [exp] 138 / 5e-41 AT5G06710 163 / 4e-49 homeobox from Arabidopsis thaliana (.1.2) Potri.007G008200 [exp] 135 / 3e-39 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.009G023600 [exp] 137 / 7e-39 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 136 / 2e-38 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.005G147100 [exp] 132 / 7e-38 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.003G079800 [exp] 130 / 4e-37 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.014G045100 [exp] 130 / 7e-37 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.016G059000 [exp] 130 / 1e-36 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.002G136400 [exp] 128 / 4e-36 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10027633 pacid=23151221 polypeptide=Lus10027633 locus=Lus10027633.g ID=Lus10027633.BGIv1.0 annot-version=v1.0 ATGGATGACGATCAAGAAGAATGCTGCAACACTGCCCTTGCCCTGGCTCTCACCATCAGCCAACCCACCAACAACAAGTGCTCGCCGCCGCCGTCAACTG CCGTCTCCTTCAACCTATTCCCCAAACAAGAAGAAGACGGCGCCGTTGTAATGGAGTCGCATCGAAAATCGTCATCGTCCACGGACGGAGGGGAATGGGC ACGACGCCGTATCGTCGACAGTGGAAGAAAGAAGTTGAGGCTGACCAAAGAGCAATCCACATTGCTGGAGAACACCTTTAATGTCCATAATACCCTCACC CAGTCACAGAAACAGGCACTTGCCGACCGCCTCAATTTGACTCCAAGACAAGTTGAAGTCTGGTTTCAAAACAGAAGGGCCAGGACGAAGCTGAAGCAAA CAGAGGTGGACTGTGAGTTTTTGAAGAAACGCTGCGAAAGCTTAAGTAGCGAGAACAGGAAACTAAAGAAGCAAATCCTGGACCTGGGTTTGGGATGTAG CTACAACATTACATCATCATCGTCGTCATCACCAGCGCCGGAGCTGGTGATATGCCGGTCGTGCCAGAAAAGAAACAGTAGATCATCGTCAGGCAGAAGA AGCGGGTAG
AA sequence Show only first row Show all	>Lus10027633 pacid=23151221 polypeptide=Lus10027633 locus=Lus10027633.g ID=Lus10027633.BGIv1.0 annot-version=v1.0 MDDDQEECCNTALALALTISQPTNNKCSPPPSTAVSFNLFPKQEEDGAVVMESHRKSSSSTDGGEWARRRIVDSGRKKLRLTKEQSTLLENTFNVHNTLT QSQKQALADRLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKRCESLSSENRKLKKQILDLGLGCSYNITSSSSSSPAPELVICRSCQKRNSRSSSGRR SG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10027633 [exp]	0	1
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10000476 [exp]	2.8	0.7408
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	6.0	0.7816
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	13.8	0.7761
					Lus10017557 [exp]	14.2	0.7882
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10000104 [exp]	14.8	0.7951
					Lus10014949 [exp]	24.3	0.7889
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	31.9	0.7295
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10011160 [exp]	39.0	0.6206
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10019331 [exp]	46.6	0.6566
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10018867 [exp]	59.7	0.7042

Compare expression of checked genes

Lus10027633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.