Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48030 495 / 5e-174 GFA2 gametophytic factor 2 (.1) AT1G28210 271 / 9e-87 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 235 / 1e-72 DNAJ heat shock family protein (.1) AT4G39960 224 / 2e-68 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 221 / 2e-66 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 199 / 3e-58 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G22060 140 / 4e-37 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 129 / 6e-33 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 115 / 1e-28 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20560 99 / 9e-23 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011934 [exp] 853 / 0 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 717 / 0 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 709 / 0 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10020949 [exp] 252 / 4e-80 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10000631 [exp] 235 / 2e-72 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 232 / 3e-71 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 218 / 2e-65 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 217 / 5e-65 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10035920 [exp] 206 / 2e-61 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065500 [exp] 630 / 0 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 606 / 0 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 286 / 9e-92 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.007G094900 [exp] 240 / 1e-74 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 232 / 2e-71 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 211 / 7e-63 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 174 / 9e-49 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.008G018800 [exp] 152 / 1e-41 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 152 / 2e-41 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 147 / 1e-39 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027634 pacid=23151281 polypeptide=Lus10027634 locus=Lus10027634.g ID=Lus10027634.BGIv1.0 annot-version=v1.0 ATGGCCACAATGGCTCGTCGGCGCGTTGGTTCCCTTGCTAGCTGCGTTCTCCCTTCTTTACGTCGTCAAGATTCTCCTAATTATCTCCATAGAAGTATGC TCAATTGGAATCATAGGGGATTAAGTACAGCTTGGGGTTGCAATCGAGCTGGGGTCAGCAATTCTATTCCGCAAAACGCTGACCGGAAAAGTTGGTCGCC ATTTGGAGCTATTAATACCAATCTCTGTGCAGTGAGGTTAATTCATGGCACAGCTTATACCTCAAAAGATTACTACGACACACTTGGTGTCAGCAAGAAT GCTACTCAATCAGATATTAAGAAATCATACTATGAGCTAGCAAAGAAATTGCATCCAGATAGTAACAAAGAGGACCCTGATGCTCAACAGAAGTTCCAAG AAGTTTCTAAGGCATATGAGGTTTTGAAAGATGAAGAAAAGCGTTCCCAATATGATCAGCTGGGGCATGAGACTTTCGAAAATCAAGGTGACGCTGGTTT CCATCCTGGCGGGATGGGATTTGATCATCCATTTGGGGACTTCTTCAGGATGGACGATGTGTTTGGCAGCATGTTTAAGCAGCGGCTTAGTGGCGAAGAT GTCAAGGTTGCCATTGAAGTATCGTTCATGGAAGCTGTTCAGGGTTGTACGAAAAATATCACATTTCAAACTGATGTTCCTTGTGAAACATGCCGTGGTG AAGGGTTTCCTCCTGGTGTGAAACCTCAAATTTGTAAGCGATGTAAAGGGAGTGGCACGATTTTCACTCAAAAAGGATTTTTCAGTGTTCAGCATCCCTG CAATCAATGTGGCGGTGCAGGACAAACTGTATCGAGCCTTTGCAAATCGTGTCAAGGACGTAGGGTACTACTAGGGTCAAAATCAATCAAATTGGATATC ATGCCAGGAGTTGATGATAATGATACGATCAAGGTACCTAGGAGTGGTGGAGCAGACCCTGACAGAAACCAACCTGGCGATCTCCTCGTCACCATAAAGG TTCGTGAGGATCCTGTCTTCCGCAGAGAGGGTTCTAGCATACATGTAGATGCTGTTTTGAGTGTTACTCAGGCAATTTTAGGGGGGACAATCAAAGTCCC GACGCTTACTGGGGATGTTGTGCTCAAGGTTCGTGCTGGCACTCAACCTGGTCAAAAAGTGGTGCTGAAGAAAAAAGGAATTAAAGCACGTAACTCGTAT ACTTATGGCGATCAGTTTGTGCACTTCAATGTCAGCATCCCAACTAGTATAAGCCCAAGGCAACGTGAATTGCTGGAGGAGTTCAGCAAGGAAGAACAGG GAGAATGCCAGAAACATGCAGCTGGAGCATCGGGTTAA
AA sequence Show only first row Show all	>Lus10027634 pacid=23151281 polypeptide=Lus10027634 locus=Lus10027634.g ID=Lus10027634.BGIv1.0 annot-version=v1.0 MATMARRRVGSLASCVLPSLRRQDSPNYLHRSMLNWNHRGLSTAWGCNRAGVSNSIPQNADRKSWSPFGAINTNLCAVRLIHGTAYTSKDYYDTLGVSKN ATQSDIKKSYYELAKKLHPDSNKEDPDAQQKFQEVSKAYEVLKDEEKRSQYDQLGHETFENQGDAGFHPGGMGFDHPFGDFFRMDDVFGSMFKQRLSGED VKVAIEVSFMEAVQGCTKNITFQTDVPCETCRGEGFPPGVKPQICKRCKGSGTIFTQKGFFSVQHPCNQCGGAGQTVSSLCKSCQGRRVLLGSKSIKLDI MPGVDDNDTIKVPRSGGADPDRNQPGDLLVTIKVREDPVFRREGSSIHVDAVLSVTQAILGGTIKVPTLTGDVVLKVRAGTQPGQKVVLKKKGIKARNSY TYGDQFVHFNVSIPTSISPRQRELLEEFSKEEQGECQKHAAGASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	0	1
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	3.7	0.8294
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	5.0	0.8146
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	6.0	0.8023
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10014190 [exp]	6.0	0.7616
AT1G71430			unknown protein		Lus10007091 [exp]	9.8	0.8089
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	10.1	0.7630
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	13.4	0.7942
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	14.1	0.8155
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10001335 [exp]	18.2	0.8264
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	18.6	0.8196

Compare expression of checked genes

Lus10027634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.