Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56890 819 / 0 Protein kinase superfamily protein (.1) AT2G20300 477 / 2e-152 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT4G02010 383 / 1e-117 Protein kinase superfamily protein (.1) AT5G13160 324 / 4e-99 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G20650 318 / 7e-98 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G18610 320 / 6e-97 Protein kinase superfamily protein (.1.2) AT5G02800 315 / 6e-97 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 311 / 1e-95 Protein kinase superfamily protein (.1) AT3G28690 309 / 1e-94 Protein kinase superfamily protein (.1.2.3) AT3G58690 308 / 4e-94 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011933 [exp] 1587 / 0 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 599 / 0 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 573 / 0 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10037526 [exp] 369 / 1e-112 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 383 / 7e-111 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 333 / 2e-102 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 318 / 5e-98 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019621 [exp] 318 / 9e-98 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 316 / 4e-97 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068100 [exp] 905 / 0 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 905 / 0 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 748 / 0 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 613 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 608 / 0 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 395 / 6e-122 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 394 / 1e-121 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 333 / 2e-102 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 327 / 5e-101 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 329 / 9e-101 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027635 pacid=23151203 polypeptide=Lus10027635 locus=Lus10027635.g ID=Lus10027635.BGIv1.0 annot-version=v1.0 ATGATAGACTCTCCAGTTGAATTAGCTCCTGCTCCAGCACTTGAAGCAATTTCAGGGCAGGTACCATCCAACCATCCAATTCCAATTGGTTCACCGCCTT CTAGTACTATTCGTCCACCTTTAGTTATTCCAGGAGATGCACCCTCTGAATCGCCAAGCCTTTCAGCTGTACCTAGATCCCATAGTGGAGCTTCTCCGCC CCAAAGTTTTGAAAGAGATGTAGCACCTATGCCATCAGATGTTTCATTCCTACCTCCGCTCCCTAATATCTCTCCTCCACCAGAGACTAGGGAAGGAAAT GTAGCACCTATGCCATCTAACTCTTCTGGTGGAAGTATTTCCTCTGTACCTCCATTGCCTAACATGGCTCCTCCACCCCAGATTTCTGCAGGGGATGTAT CACCTATGCCATCTAATAACTCTTCAACGCATGGTATAGCTCCTCCACCCCTGATTTCTCCAGGACAATTAGCACCTATGCCTTCGGGAGAAATCAGTTC AATTGTACCTCCATCACATAGTATAGTTCCTCCTACCCCAATTTCTCAAGGACATGTAGCACCTATGCCTTCTGGAGAAAGTTTTTCATTGCCACCTCCA ATATCTAGTGTGGCTCCTCCACCTCAGATTCCTGACGTGCATGTAGCACCTATTCCATCTAGTGTTGCACCCCCTGCGCATAGTGTAGCTCCTCCATCCC CAGTCTTTCAAGGACAAGTAGCACCTACGCCTTCAGAAGCCTCTGGAGAAAGAGGTTCATTAGTACCTCCACCAAATAGTGTAGCTCCTCCACCCCAGAA TTCCGAAGGTAAACCTGCACCTCCGCCATCAAACGATAGCATTAGAATAGCCCCTCCTCCACAGATTATTCAAGGAGCAGCAGCACCTATGCCATTAAAT GATACTGGAGGAAAGAAACCTGGTGAAAAGACTCCTGCCTCCATGCCAGCTTCAGCACCTCCAACTAAAGCATTACCAAGTTTACCTATCATCCACCCTG GTGTACCGGAACATTCAACTCCGAGTGCTCATCGGAAGAATATGTTGTTTCATGGTTCTCCTCTCCAAAAACCAGAACCAGCAGTTGCACTACCTCCAAG GCCATCACGGAGGAAGAAACCAGCTATCCGTACAATTGCACCAGCAGCCATTATCCCATCTCTCCCGCCCGATCCTGATGTCTCATCTCCATCATCTACT CCTGGAAGAGCTGATTGGAAAAGAGATGGACTTCCAGTTACTGCACCCTCAACTGGAATACACAAGCCTTTGCCACCTAGAATCCGTTCACCCACTAAAG CTTCGTTTCCTGCTGTCGCTCCTTCTGAGCATAAAGCCGCGAGGCATTCAGATCAGCCTCTTGCTCCATCTGTGCCTTCTCATAAGAAACACAATGCAAG AGGTGGAATGAGTAATGGTACTCCTGCATCATCATACGTTATACCTCCTCGCTCATCGGAAGAGCCAGGTCTTGGTCCACCTATCACATTTTTAAGCTTT GTGAAGATGGCGTCTTATGATAGACTTTTATGGTTTACTATCCTCTTGAACTTTATGTCTACTTACAATTGTCTCCGTCCCTTTGCAGCACTCCCTCCCT CATCTCTTCCAATTACCAGGAGAACCCACTTTGCTTCTCCACCCAGCAATCCAGGTCCTGCTTCTCCTTCCCATCATTCCACCCCTAAACCAGATTTAAG GGTTCCACCAGCTCCCTCGCCATCCAGTATATCACCTAACTGGACCACAATACCAATTCTTCCACCAAAAGATTCTCCGAGTTCTCCATTGAAGAGTCCT ATGCCCTTCCTTCCAACAATCCATGCACTGCCACCTCCACCTCCCAATCAAGATTGTTCGGCGGTTGTCTGCATGGAACCATATGCTAATACTCCACCTG GCTCTCCATGTGGATGTGTATTGCCCATGCAAGTTGGACTACGGCTTAGTGTTTCTCTCTATACCTTTTTCCCATTGGTTTCTGAATTGGCTCAAGAGAT CGCTGCCGGTGTGTTTATGAAACAAAGTCAAGTCCGGATTATGGGAGCCAATGCCGCTAGCCAGGAACCCGAGAAGACCATTGTCCTCACTGACTTGGTT CCACTTGGACAAAAGTTTGACAATACAACTGCTTTATTGACATATCAAAGATTCTGGCAGAAACAAGTAGCGATACAGCCTTCCTTCTTTGGTGACTATG AAGTACTGTACGTGCGGTATCCAGGTTTACCCGCATCTCCACCTTCATCAATTTCCGGGATTAATATAATTGATGATGGGCCATATTCCGGCAATGGAAA CAATGCAAGAACAATAAAGCCCCTAGGCGTTGATGTATCAAAAAGGCAACAAAAAGATGGGCTTAGTGGTAGCATGATTGCTATCATCGCCCTTTCTGCT TCTATCGTCGTAATCTTGAGCTCTGCAGCTACATGGATATTTTTTTTGAGGAATCGAGGCCATGGCAGGGACCCAACGCCGACACTGGCACCTATACATG CTTCTGTTGCAAAACCCTTAGGGACTACTGGATTTGCTTTAGGAAGTGGTCTGAGTTCTAACTCACTGTCATTTGGCTCTAGCATTGCTCCATATACAGG ATCTGCCAAGACCTTCAGTGCAAGTGATATTGAGAGGGCGACAAATAACTATAATTTGTCAAGACTGCTTGGGGAAGGTGGCTTTGGACGTGTTTATAGT GGTGTTCTTGAAGATGGGACCAAAATAGCTGTGAAAGTCCTGAAAAGAGATGACCAACAAGGTGGTCGAGAATTCTTAGCAGAAGTTGAGATGCTTAGCC GCCTTCATCACCGAAATCTAGTTAAGTTGATTGGAATATGCACAGAAGAGTCTGCAAGATGCCTCGTTTATGAACTAGTACCTAATGGCAGCGTGGAATC TCATTTGCATGGGGATGATGGGGATTCTGTACCACTTGATTGGGATGTGAGGATCAAGATAGCACTTGGTGCTGCTAGAGGTCTAGCTTATCTTCATGAG GATTCGAGTCCCCGTGTTATCCACAGAGATTTCAAATCCAGCAACATCTTATTGGAAAGTGATTACACACCAAAAGTTTCTGATTTTGGTTTGGCACGAA GTGCCCTGGATGAGGAAACCAGCCATATATCTACACGTGTCATGGGGACGTTCGGGTATGTAGCTCCAGAGTATGCAATGACCGGTCATCTTCTAGTGAA AAGTGACGTATACAGCTATGGTGTGGTCCTTCTTGAGCTTCTAACTGGAAGAAAGCCAGTGGATATGTCACAACCGGCAGGTCAAGAGAATCTAGTAGCA TGGGCGCGGCCGCTTCTAACAAGCAAAGAAGGGCTTGAAATGATGATAGATCCATCTCTGGGCCCTGATGTGCCCTTCGATAGTGTGGCCAAGGTTGCAG CAATTGCATCGATGTGTGTGCAACCGGAGGTGTCTCATCGTCCATTCATGGGCGAAGTAGTTCAAGCATTGAAACTGGTATCCAATGAATGTGACGAGGC AAAGGAAGGAGGGTCAGTAAGTTTCAGCCGAGATTTATCTGTTGACACAGATGCTGGGGAGAGTACAACATCAGGCCAAGGGCAGCCATTCAACAATCAA ATCATAGGGCCAAACTATGACTCTGATATTGAGAGAGGCGTGGCATTGTCGGATATGTTTGCTACGTCGGAAAGATTCAGTGGGCAACCGCAATCTGCAT CGTTCAGGAGGTACTCGAGTTCGGGACCACTGAGGCCCGGAAAAGGAAGAGAGTGGTGGCAGAGAATGAGAAGATTGAGAGGGGAAAGTGTGAGTGAACA TGGGGTTATGTTCAGACAATGGGCAGGTTCATATTGA
AA sequence Show only first row Show all	>Lus10027635 pacid=23151203 polypeptide=Lus10027635 locus=Lus10027635.g ID=Lus10027635.BGIv1.0 annot-version=v1.0 MIDSPVELAPAPALEAISGQVPSNHPIPIGSPPSSTIRPPLVIPGDAPSESPSLSAVPRSHSGASPPQSFERDVAPMPSDVSFLPPLPNISPPPETREGN VAPMPSNSSGGSISSVPPLPNMAPPPQISAGDVSPMPSNNSSTHGIAPPPLISPGQLAPMPSGEISSIVPPSHSIVPPTPISQGHVAPMPSGESFSLPPP ISSVAPPPQIPDVHVAPIPSSVAPPAHSVAPPSPVFQGQVAPTPSEASGERGSLVPPPNSVAPPPQNSEGKPAPPPSNDSIRIAPPPQIIQGAAAPMPLN DTGGKKPGEKTPASMPASAPPTKALPSLPIIHPGVPEHSTPSAHRKNMLFHGSPLQKPEPAVALPPRPSRRKKPAIRTIAPAAIIPSLPPDPDVSSPSST PGRADWKRDGLPVTAPSTGIHKPLPPRIRSPTKASFPAVAPSEHKAARHSDQPLAPSVPSHKKHNARGGMSNGTPASSYVIPPRSSEEPGLGPPITFLSF VKMASYDRLLWFTILLNFMSTYNCLRPFAALPPSSLPITRRTHFASPPSNPGPASPSHHSTPKPDLRVPPAPSPSSISPNWTTIPILPPKDSPSSPLKSP MPFLPTIHALPPPPPNQDCSAVVCMEPYANTPPGSPCGCVLPMQVGLRLSVSLYTFFPLVSELAQEIAAGVFMKQSQVRIMGANAASQEPEKTIVLTDLV PLGQKFDNTTALLTYQRFWQKQVAIQPSFFGDYEVLYVRYPGLPASPPSSISGINIIDDGPYSGNGNNARTIKPLGVDVSKRQQKDGLSGSMIAIIALSA SIVVILSSAATWIFFLRNRGHGRDPTPTLAPIHASVAKPLGTTGFALGSGLSSNSLSFGSSIAPYTGSAKTFSASDIERATNNYNLSRLLGEGGFGRVYS GVLEDGTKIAVKVLKRDDQQGGREFLAEVEMLSRLHHRNLVKLIGICTEESARCLVYELVPNGSVESHLHGDDGDSVPLDWDVRIKIALGAARGLAYLHE DSSPRVIHRDFKSSNILLESDYTPKVSDFGLARSALDEETSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPAGQENLVA WARPLLTSKEGLEMMIDPSLGPDVPFDSVAKVAAIASMCVQPEVSHRPFMGEVVQALKLVSNECDEAKEGGSVSFSRDLSVDTDAGESTTSGQGQPFNNQ IIGPNYDSDIERGVALSDMFATSERFSGQPQSASFRRYSSSGPLRPGKGREWWQRMRRLRGESVSEHGVMFRQWAGSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	0	1
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	1.7	0.8656
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	2.0	0.8593
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	2.2	0.8370
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	3.9	0.8402
AT3G12020			P-loop containing nucleoside t...		Lus10029307 [exp]	5.0	0.7804
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	6.7	0.8176
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	13.0	0.8180
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	14.1	0.8402
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	16.5	0.8100
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	18.0	0.7948

Compare expression of checked genes

Lus10027635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.