Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24740 168 / 1e-51 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 163 / 1e-48 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 133 / 1e-37 AME3 Protein kinase superfamily protein (.1.2.3) AT3G17750 61 / 4e-11 Protein kinase superfamily protein (.1) AT2G40120 61 / 6e-11 Protein kinase superfamily protein (.1) AT1G73450 58 / 5e-10 Protein kinase superfamily protein (.1) AT1G73460 57 / 7e-10 Protein kinase superfamily protein (.1) AT4G04710 48 / 1e-06 CPK22 calcium-dependent protein kinase 22 (.1) AT1G61950 47 / 3e-06 CPK19 calcium-dependent protein kinase 19 (.1) AT2G38910 46 / 5e-06 CPK20 calcium-dependent protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019458 [exp] 197 / 7e-62 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 197 / 8e-62 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 169 / 8e-51 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 165 / 4e-49 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10036878 [exp] 163 / 1e-48 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10006230 [exp] 105 / 6e-28 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2) Lus10032401 [exp] 84 / 3e-21 AT3G53570 53 / 8e-10 FUS3-complementing gene 1 (.1.2.3.4) Lus10031328 [exp] 64 / 1e-12 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10031902 [exp] 65 / 2e-12 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085700 [exp] 182 / 4e-56 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 177 / 2e-54 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G213400 [exp] 169 / 4e-51 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.016G079900 [exp] 169 / 6e-51 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.010G049100 [exp] 167 / 3e-50 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G244400 [exp] 139 / 7e-40 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G188400 [exp] 72 / 5e-15 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 68 / 2e-13 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 67 / 4e-13 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 67 / 5e-13 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027636 pacid=23151233 polypeptide=Lus10027636 locus=Lus10027636.g ID=Lus10027636.BGIv1.0 annot-version=v1.0 ATGCATGAGTTGCAGCTTATTCACACCGATTTGAAGCCTGAGAACGTTCTCTTAGTTTCGTCAAACTATGAGGAAGTGCATGATTACGAGGCTACTTCTG GTTCTTACTTTAAAAGAGTTCCAAAGTCGAGTGCAATAAAGGTTATTGATTTTGGGGGCACAACTTATTATCGTGAGGGTCCGAGTCGCCTTGTGTCAAG CGCGTATTATCGAGTTCCAGAAGTCATCCTTGTGGAGTTGTGTACAGGTCATGCTTTATTTGAAAGTGATGATATGATGGAGCTCCTTGTGATGATGGAG CGTGTGCTTGGACCAATACCGCAGCACATGTTGAAGGTAGTAGCAGATCGACAGGCTGCCAATTTTCAGCCCAGCCAAAGGATTAAACTGATCTGGCCAG ATGATGATGATACATCTAGTGAGAGGATCATGGCAGTAGTGAACGTGGACCATTCTGCCGGGGATTTCATTCGTTTGTTGCAAGGACTTCTCAAGTACGA TCCTTTGGAAAGGCTTACCGCACGCCGGGCATTGAGCCATACCTTCTTCTGA
AA sequence Show only first row Show all	>Lus10027636 pacid=23151233 polypeptide=Lus10027636 locus=Lus10027636.g ID=Lus10027636.BGIv1.0 annot-version=v1.0 MHELQLIHTDLKPENVLLVSSNYEEVHDYEATSGSYFKRVPKSSAIKVIDFGGTTYYREGPSRLVSSAYYRVPEVILVELCTGHALFESDDMMELLVMME RVLGPIPQHMLKVVADRQAANFQPSQRIKLIWPDDDDTSSERIMAVVNVDHSAGDFIRLLQGLLKYDPLERLTARRALSHTFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10027636 [exp]	0	1

Compare expression of checked genes

Lus10027636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.