Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20590 532 / 0 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 418 / 2e-141 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 406 / 2e-137 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 404 / 9e-137 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G62390 374 / 1e-125 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G49340 354 / 3e-118 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G19160 310 / 4e-101 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 308 / 3e-100 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 281 / 4e-91 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 277 / 1e-88 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011932 [exp] 846 / 0 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 418 / 6e-141 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 385 / 4e-129 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 370 / 9e-124 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10029126 [exp] 353 / 6e-117 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 330 / 6e-109 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10004159 [exp] 315 / 1e-101 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10034041 [exp] 308 / 5e-100 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 304 / 8e-99 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G071500 [exp] 553 / 0 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 544 / 0 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 403 / 5e-135 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 400 / 5e-134 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 390 / 3e-131 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 382 / 3e-129 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 382 / 3e-129 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.002G195800 [exp] 379 / 2e-126 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.001G010900 [exp] 376 / 1e-125 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G203900 [exp] 305 / 3e-99 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10027637 pacid=23151303 polypeptide=Lus10027637 locus=Lus10027637.g ID=Lus10027637.BGIv1.0 annot-version=v1.0 ATGGCTGAGTGGGCTACCTTTTCCTTGGGCAATCGTTCCACTTTAACCATTCTCCTCTCCATTTCTCTCTTCCTCTCCGTAATCTTAATCTCCAATCGAC GCTATGTCCAGCAATCCCTTGACGATTTCTTCCCTCCAATCCGCCTCACTGCCTCCTCTGCTCCACCACCGCTGCCTCAGCAGCAGCAGCAGCACCGCTC TTCGCTCCCGGATATCAGCCGGCAACCTAAACCCGCCGTAATCGATCAAGAGTCCGAGCTTCTCCCGCCTGCCACTGTTGAGGAGAAGAATAATGTAGAA CCCGTAGTAGATTCTGTACAACACAATGATGCCACACCCGAGATGGAGAAAGTGACGCGAGAGAGTCTCAAGGACTGCAATCTGTACATGGGAAGTTGGG TGAGATATGAAAGTTATCCGATCTACAAACCCGGTTCTTGCCAATACGTTGATGAAGCTTTCGATTGCCAAGCTAATGGGAGGCCAGATTCTGACTATCT CCGTTGGCGTTGGAAGCCCGATGGATGCGATCTCCCCAGGTTCAACGCAACAGATTTCTTGCAGAGACTAAGGGGTAAGAAACTGCTGCTTGTTGGGGAC TCTGTGAACAGAAACCAGTTTGAATCTATCTTATGTCTCCTCCGGGAAGGCCTGCCTGATAAAACTAGAATGCTTGAGATCAATGGCCACAAAATTACCA AGGGCCGGGGTTCCTATGTCTTCAAGTTTCTGGATTATAACTGTTCAGTGGAATATGCACTGTCTCATTACCTTGTCAAAGAAGGGGTCCGGGTTAACGG GCAAGGAAACTCTAATCCAACTCTGTCCATCGATCAAGTCGGCAAGACTTCGAAGAAATGGAAGCGAGCTGACATTATTGTCTTCAATACTGGTCATTGG TGGAGCCATAGGAAAACTTCACGAGGGGTAAATTACTACAAAGAAGGTGGTTATATCTACCCACACCTTGATTCGAATGAGGCTTACAGGCGATCCCTAC AGACCTGGGGGAGGTGGATAGATCAAAATTTGAATGCGACGAAGCAATTGGTGTTCTATCGTGGATACTCCACGCCGCATTTCCGAGGTGGAGAATGGGA CTCGGGAGGGACGTGCTACAATGAAAAAGAACCGATATTGAGTGATCGGGAAGCCATTGTGAAGAGCTACCCTGGGAAAATGAAGGTAGTGGAGGAGGTG ATAAAGGGGATGAAGTTTCCAGTGAGGCTGCTGAATGTAACAAGGCTTACCAATTTTAGAAAGGATGGGCATCCATCAGTTTATAGAAAGAATAGGAGCA CAAATAGTGGTAGTAAAAGGAAAGTGCAGGATTGTAGCCATTGGTGTCTACCTGGTGTGCCCGATGCATGGAACGAGCTCATTTACGCAAACCTCATCAT GAAATGA
AA sequence Show only first row Show all	>Lus10027637 pacid=23151303 polypeptide=Lus10027637 locus=Lus10027637.g ID=Lus10027637.BGIv1.0 annot-version=v1.0 MAEWATFSLGNRSTLTILLSISLFLSVILISNRRYVQQSLDDFFPPIRLTASSAPPPLPQQQQQHRSSLPDISRQPKPAVIDQESELLPPATVEEKNNVE PVVDSVQHNDATPEMEKVTRESLKDCNLYMGSWVRYESYPIYKPGSCQYVDEAFDCQANGRPDSDYLRWRWKPDGCDLPRFNATDFLQRLRGKKLLLVGD SVNRNQFESILCLLREGLPDKTRMLEINGHKITKGRGSYVFKFLDYNCSVEYALSHYLVKEGVRVNGQGNSNPTLSIDQVGKTSKKWKRADIIVFNTGHW WSHRKTSRGVNYYKEGGYIYPHLDSNEAYRRSLQTWGRWIDQNLNATKQLVFYRGYSTPHFRGGEWDSGGTCYNEKEPILSDREAIVKSYPGKMKVVEEV IKGMKFPVRLLNVTRLTNFRKDGHPSVYRKNRSTNSGSKRKVQDCSHWCLPGVPDAWNELIYANLIMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	0	1
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	2.2	0.8133
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	3.5	0.7781
AT4G35320			unknown protein		Lus10022985 [exp]	11.0	0.7772
AT4G33820			Glycosyl hydrolase superfamily...		Lus10033784 [exp]	11.7	0.7281
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	12.0	0.7567
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	12.0	0.7812
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10042136 [exp]	12.3	0.7236
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	17.8	0.7723
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	19.8	0.7498
AT3G57400			unknown protein		Lus10042067 [exp]	20.2	0.7543

Compare expression of checked genes

Lus10027637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.