Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05940 514 / 0 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G26290 505 / 4e-178 ARSK1 root-specific kinase 1 (.1) AT5G35580 482 / 1e-167 Protein kinase superfamily protein (.1) AT1G72540 437 / 8e-151 Protein kinase superfamily protein (.1) AT1G61590 419 / 4e-144 Protein kinase superfamily protein (.1) AT5G01020 415 / 1e-142 Protein kinase superfamily protein (.1) AT3G28690 394 / 6e-135 Protein kinase superfamily protein (.1.2.3) AT5G15080 391 / 3e-132 Protein kinase superfamily protein (.1) AT3G01300 384 / 2e-129 Protein kinase superfamily protein (.1) AT5G56460 379 / 1e-128 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011930 [exp] 869 / 0 AT2G05940 530 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10034897 [exp] 506 / 6e-177 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 502 / 2e-175 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008110 [exp] 471 / 5e-164 AT2G05940 486 / 2e-170 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013148 [exp] 469 / 4e-163 AT2G05940 484 / 3e-169 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033294 [exp] 424 / 7e-147 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10034757 [exp] 422 / 7e-145 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10036762 [exp] 413 / 6e-141 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 398 / 9e-135 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219300 [exp] 592 / 0 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 552 / 0 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.003G066300 [exp] 486 / 5e-170 AT2G05940 540 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G168000 [exp] 473 / 9e-165 AT2G05940 519 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 434 / 6e-150 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 429 / 5e-148 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 425 / 2e-146 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 424 / 3e-146 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 405 / 6e-138 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 397 / 3e-136 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027638 pacid=23151250 polypeptide=Lus10027638 locus=Lus10027638.g ID=Lus10027638.BGIv1.0 annot-version=v1.0 ATGAAAAGCACATGGAAATCGATGATCTGCGGCTGCTCAAGCTTCAACTACAGAGAGACAAGTCCGCTGCCGGAGTTACTAGAGGACGATGAGGATGAGG AGGAGGGGGTTGTGAAAAAGACTATGAGCAGTACGAGTTCCTTCTCAAGGATGTCTCTCTCCGACGTTAGCAATCCAAAACTGTGTATGGAAGACATCTC GAATTCGTTTGTGGGTTCGAAGCTGTATGTTTTCACGTTTGCAGAGTTGAGGTTGATCACCCAGAACTATGCTCGGGTTAATCTGCTGGGTGAAGGAGGG TTCGGCCCCGTTTACAAAGGGTTCGTTGACGACAAGGTCAAGCCTGGGTTGAAGGCTCAGCCTGTAGCTGTCAAGTCCCTGGATTTGGATGGGCTACAAG GCCACAAGGAATGGGTGGCGGAGATAATATTTCTGGGACAGCTGCGGCATCCGCATCTAGTGAAACTGATTGGTTACTGCTACGAGGAAGAACAGAGGGC TCTGGTTTACGAGTATATGCCCAGGGGGAGTCTTGAGAATCAGCTTTTCAGAAGATTTTCTGCTGCATTGCCATGGCCAACCAGGATGAAAATTGCTCTG GGGGCAGCCAAAGGTCTGGCTTTCCTCCACGAAACAGAGAAACCAGTTATATACCGTGATTTCAAGACTTCCAACATCTTGTTGGATTCTGATTACACAG CAAAACTGTCCGATTTCGGACTGGCAAAAGACGGTCCAGAAGGAGAAGAGACTCACATCATAACCAGAGTAATGGGTACACAAGGATATGCCGCCCCTGA GTACGTTATGACTGGTCACCTTACGACGATCAGCGACGTATACAGTTTTGGAGTAGTGCTGTTAGAGCTACTTGCGGGGCGTCGGTCAATGGACGAGACA AGGGCATACAAGGAGCAAAGTCTTGTGGGATGGGGACGACAGTTGTTAAAAGACCCTAACAAGCTTGGTCGTGTTATGGATCCTAGGCTGGAAGGACAAT ACTCTGAGAGTGGGGCTCAAAAGGCTGCCGCACTCGCCTACAAATGCTTGAGCCACCATCCTAAGCACAGGCCCACAATGACCCAAGTCGTCGCTGTCCT CGACTCTATCCAGAACCACGAGGATGATGATGTCGACACATTTGCTAGCTCCGGTCCTTTCGTTTACATCGTTCCCAACGAAAACGTCGTTGGTTTTGAT GAAACTGAGACCGTCTCTGAAAGTGGACGGAATAGATCGTTTAATTATCGGCGTCGACGACATGATCAGTACCGTAAGGGAGACGGTGGCAGTTTCAAAC ATCGAATCAAGTTACCGTTGTCACAACTGGTTAAGTATTCGGACTCGGTTCTTTACGACACGTTCGAAAATGGCAGTGATTCTCCTGCAACTCTTAAGAA AGAGCAGTTATAG
AA sequence Show only first row Show all	>Lus10027638 pacid=23151250 polypeptide=Lus10027638 locus=Lus10027638.g ID=Lus10027638.BGIv1.0 annot-version=v1.0 MKSTWKSMICGCSSFNYRETSPLPELLEDDEDEEEGVVKKTMSSTSSFSRMSLSDVSNPKLCMEDISNSFVGSKLYVFTFAELRLITQNYARVNLLGEGG FGPVYKGFVDDKVKPGLKAQPVAVKSLDLDGLQGHKEWVAEIIFLGQLRHPHLVKLIGYCYEEEQRALVYEYMPRGSLENQLFRRFSAALPWPTRMKIAL GAAKGLAFLHETEKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGEETHIITRVMGTQGYAAPEYVMTGHLTTISDVYSFGVVLLELLAGRRSMDET RAYKEQSLVGWGRQLLKDPNKLGRVMDPRLEGQYSESGAQKAAALAYKCLSHHPKHRPTMTQVVAVLDSIQNHEDDDVDTFASSGPFVYIVPNENVVGFD ETETVSESGRNRSFNYRRRRHDQYRKGDGGSFKHRIKLPLSQLVKYSDSVLYDTFENGSDSPATLKKEQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10027638 [exp]	0	1
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	1.7	0.9485
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	2.0	0.9534
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	2.2	0.9560
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	4.6	0.9419
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10036879 [exp]	6.0	0.9437
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	6.2	0.9282
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	12.4	0.9217
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	14.4	0.9460
					Lus10040377 [exp]	15.9	0.9202
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	16.1	0.9446

Compare expression of checked genes

Lus10027638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.