Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20900 82 / 3e-19 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT3G43440 57 / 1e-09 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G19180 50 / 3e-07 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G74950 49 / 8e-07 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT5G13220 48 / 1e-06 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G72450 45 / 2e-05 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G17380 40 / 0.0006 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011929 [exp] 244 / 3e-81 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10039911 [exp] 56 / 7e-09 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 52 / 2e-07 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10008129 [exp] 50 / 6e-07 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013166 [exp] 43 / 9e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10035804 [exp] 43 / 0.0001 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10002576 [exp] 41 / 0.0002 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10017991 [exp] 42 / 0.0003 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217200 [exp] 109 / 5e-29 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.018G047100 [exp] 100 / 8e-26 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G139400 [exp] 50 / 3e-07 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.003G165000 [exp] 45 / 8e-06 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.001G062500 [exp] 44 / 2e-05 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.003G068900 [exp] 44 / 6e-05 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10027639 pacid=23151191 polypeptide=Lus10027639 locus=Lus10027639.g ID=Lus10027639.BGIv1.0 annot-version=v1.0 ATGGAAAGTGAGACCGGTCAATCTCCCGAGGAGCAAGTAGTAAACAACAAGGTCGAGGTGAAAAAGGAGGAATCAGCAGAGCTTGAGGGTGAAGAGACTG AGATTGTTGGTGGCGGCGCTGACCACAAGTCTGGATCTGAACCCACTGCTGCTCTTCCTTCTTCTAACTCCTCCTCCTCCTCCAGGAATGAAGCTTTGGC AAAATCTGGGATAGTAGACACCAGTGTTCCTGCAGAGCCAGAACAACTCACTATTTTCTACGGCGGAAGTGTAATAGTCCTTGATGGGATTCCTGCAGAC AAGGCCCGTGAGATAATGGCCATTGCTGCTGCTGCAGCGAAAGCTGTCAAGTCTACTGATATCAAGAAGATCGAAACAGCAACACCAACTCCTGCTCCTG CTTCTCCTGCTGCTGCTCCTGGTGGTACTGGTACGGGTACACCATTGCTCTCGAGGTCTGCTACAATGCAGAGTACTACTGCTACTCCTACTGGATTGGC TTCAGAGCAGTACGCTGCGCATAAGAATTCCCTCTGCAAAATGCAAGCTGAATTACCAATTGCAAGGAGACACTCTCTTCAGCGCTTTTTCGAGAAAAGA AGGGACAGGATGATGACTAAGAGTCCATACTCTGTACCTTCCCCCTCCTCAGCTAAGCTTGAAGACAATCAAAAGATGGCTGCTGCTGCTGCAAGTACTA CTCCAAACCATATGGTTTGA
AA sequence Show only first row Show all	>Lus10027639 pacid=23151191 polypeptide=Lus10027639 locus=Lus10027639.g ID=Lus10027639.BGIv1.0 annot-version=v1.0 MESETGQSPEEQVVNNKVEVKKEESAELEGEETEIVGGGADHKSGSEPTAALPSSNSSSSSRNEALAKSGIVDTSVPAEPEQLTIFYGGSVIVLDGIPAD KAREIMAIAAAAAKAVKSTDIKKIETATPTPAPASPAAAPGGTGTGTPLLSRSATMQSTTATPTGLASEQYAAHKNSLCKMQAELPIARRHSLQRFFEKR RDRMMTKSPYSVPSPSSAKLEDNQKMAAAAASTTPNHMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10027639 [exp]	0	1
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	8.1	0.9087
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	10.7	0.8967
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10042557 [exp]	22.3	0.8992
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10017212 [exp]	27.8	0.9048
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	35.9	0.8926
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	52.8	0.8866
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	78.1	0.8597
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	82.6	0.8764
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	94.1	0.8615
AT2G18420			Gibberellin-regulated family p...		Lus10021098 [exp]	96.4	0.8691

Compare expression of checked genes

Lus10027639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.