Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 554 / 0 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 538 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 530 / 0 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G19130 144 / 1e-38 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 143 / 4e-38 ATRBP47A RNA-binding protein 47A (.1) AT5G54900 137 / 4e-36 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 136 / 7e-36 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 136 / 8e-36 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 132 / 3e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 130 / 1e-33 ATRBP47C RNA-binding protein 47C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011924 [exp] 752 / 0 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 552 / 0 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10013167 [exp] 471 / 6e-166 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10036435 [exp] 395 / 1e-130 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10041109 [exp] 361 / 1e-122 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10021754 [exp] 145 / 1e-38 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012070 [exp] 134 / 5e-35 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10031844 [exp] 133 / 1e-34 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 133 / 1e-34 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139300 [exp] 588 / 0 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 565 / 0 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 563 / 0 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G279600 [exp] 508 / 3e-180 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 506 / 3e-179 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.014G034600 [exp] 148 / 5e-40 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 144 / 1e-38 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 143 / 3e-38 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G143400 [exp] 142 / 6e-38 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 142 / 8e-38 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027641 pacid=23151249 polypeptide=Lus10027641 locus=Lus10027641.g ID=Lus10027641.BGIv1.0 annot-version=v1.0 ATGATGCAGCAGCAGCAGCAGCAGAGGCTTAAGCAGCAACAGATCATGAGCATGATGCAGTATCACCCTGCTGCTTATCTAGCTGCTCCCCAGATAGAGC CTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATCCAAGTACATGCCGCAGTGTGTACGTGGGAAATATCCACCCATCGGTCACAGAACCCCTCTTGCA GCAGGTTTTCTCAAGCACTGGACCAATTGAAGGATGTAAGCTCATTAGAAAGGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGGAGATGTGCT TCCCATGCCATCTTAACCCTGAACGGAAGGCCCCTGTTTGGACAACCTATCAAAGTTAACTGGGCATATGCTAGCAGTCAGCGAGAGGATACTTCAGGTC ACTATAATATTTTTGTGGGTGACCTTAGCCCCGAAGTTACCGATGCCACCTTGTATGCTTGCTTCTCCAGTTATCCTACTTGCTCAGATGCGAGAGTTAT GTGGGACCAGAAGACTGGTCGTTCGAGGGGTTTTGGTTTTGTTTCTTTCAGGAACCAGCAAGATGCTCAAAGTGCAATTAATGATTTGAATGGAAAGTGG CTTGGAAGCAGACAAATTAGATGTAATTGGGCGACAAAAGGTGCCCTCTCTAGTGAAGATAAGCAGGGCTCCGATGCCAAAAGCGTTGTTGAGCTGACTA GTGGATCTGATGATGGTCAAGACAAGAGAAGTGACGATGCCCCAGAAAATAATCCCCAGTATACAACTGTATATGTTGGCAATCTTGCTCCTGAGGCATG GAATTCTCACTCTGTTACTAATGTTGATCTTCATCGGCATTTCCATACATTTGGAGCTGGTATCATTGAAGATGTGAGAGTGCAGCGGGACAAGGGTTTT GGATTTGTGAGGTACAGTACACATGATGAAGCGGCTCTTGCAATCCAAATTGGAAACGCAAGGATCCTATATGGAAAACCAATCAAGTGTTCATGGGGTA GCAAACCAACCCCGCCAGGGATGAGCTCTACACCGCTTCCGCTGCCACCGGCTGCAGTGGCAGGTGGTGGGCAGAATGGAGGATTCTCAGCAGCAGAGCT AATGAATTACGAGAGGCAGATGGCATTGAGCAAAATGGCACTGATGCAGCAGCATGTACAGATGAGACAGGCTGCAGCCATGGGAATGGCGGGTGGAAGT GGCCAGGGTGGGTACGACGGCAGTGGATTCCCAGGCGTTGCCACTAGTCAGCAGCAGCAGCAGCAGCAGCTCATGTACTATCAGTAA
AA sequence Show only first row Show all	>Lus10027641 pacid=23151249 polypeptide=Lus10027641 locus=Lus10027641.g ID=Lus10027641.BGIv1.0 annot-version=v1.0 MMQQQQQQRLKQQQIMSMMQYHPAAYLAAPQIEPILSGNLPPGFDPSTCRSVYVGNIHPSVTEPLLQQVFSSTGPIEGCKLIRKEKSSYGFVDYFDRRCA SHAILTLNGRPLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLYACFSSYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLNGKW LGSRQIRCNWATKGALSSEDKQGSDAKSVVELTSGSDDGQDKRSDDAPENNPQYTTVYVGNLAPEAWNSHSVTNVDLHRHFHTFGAGIIEDVRVQRDKGF GFVRYSTHDEAALAIQIGNARILYGKPIKCSWGSKPTPPGMSSTPLPLPPAAVAGGGQNGGFSAAELMNYERQMALSKMALMQQHVQMRQAAAMGMAGGS GQGGYDGSGFPGVATSQQQQQQQLMYYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	2.4	0.8408
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10030471 [exp]	7.1	0.8057
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011260 [exp]	7.5	0.8125
AT5G57370			unknown protein		Lus10006974 [exp]	8.1	0.8379
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	10.4	0.8393
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	12.8	0.8249
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	16.4	0.8338
AT1G03910			unknown protein		Lus10027605 [exp]	16.5	0.8131
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10029631 [exp]	35.7	0.7722
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	40.6	0.7698

Compare expression of checked genes

Lus10027641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.