Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74940 82 / 2e-19 Protein of unknown function (DUF581) (.1) AT5G20700 64 / 2e-12 Protein of unknown function (DUF581) (.1) AT1G22160 62 / 2e-12 Protein of unknown function (DUF581) (.1) AT5G49120 60 / 1e-11 Protein of unknown function (DUF581) (.1) AT5G65040 55 / 4e-10 Protein of unknown function (DUF581) (.1) AT2G25690 55 / 3e-09 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT1G78020 53 / 7e-09 Protein of unknown function (DUF581) (.1) AT1G53903 52 / 9e-09 Protein of unknown function (DUF581) (.1) AT1G53885 52 / 9e-09 Protein of unknown function (DUF581) (.1) AT3G63210 53 / 1e-08 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011923 [exp] 267 / 2e-92 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 61 / 2e-11 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 59 / 2e-10 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10022948 [exp] 58 / 2e-10 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 58 / 3e-10 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 56 / 4e-09 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 50 / 9e-08 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 49 / 2e-07 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 49 / 3e-07 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139200 [exp] 76 / 9e-17 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.018G146800 [exp] 61 / 3e-11 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 58 / 8e-11 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.001G163400 [exp] 57 / 3e-10 AT1G53903 113 / 5e-33 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 56 / 4e-10 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 56 / 2e-09 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 56 / 3e-09 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 55 / 5e-09 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 54 / 6e-09 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 52 / 7e-09 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10027642 pacid=23151224 polypeptide=Lus10027642 locus=Lus10027642.g ID=Lus10027642.BGIv1.0 annot-version=v1.0 ATGGTAGGAAACAAGATCAGTCAAAGACCACACACTATCATGATCAAAAAGTTATCGGAACTCCTCCTAGTCTCCGGCTGCCACCGTCAAGAATCATACT CTACGTCCACCACCAGTCCCAGAAGTCCACTTGATTACCCCAAAATCCAGTCCCCAACAGCCCAAAAGAATTTCCATCTCGCCGGAGTCGGATTGGGAAT CGTGGCCGCCCTGGACGCTCGGTCGTCGGAGGTACTGGCCAAGCATTCGATTTGCTGCTTCCCTAAATCCGATCCGATTCCCGCTGGAGAAGAAGAAAAG GAAAGTTATGGTTATTCGAATCTATGGAGTTGGTGCGACTTGTGCCGAAAGCAGCTCCATGGGTTAGATGTGTACATGTACAGAGGGGAGAAGGCGTTCT GTAGCACGGAGTGCAGGTCGAGACAGATTATAATGGATGAACAAGAGTTATTACAGAAGCGCAAGGACAAGTGCCGGAGGAAGAGATCTAGTGGTGGTGA TACATCCAGAAACAGCAGTAGCCCACCCATTTTCTCAACTGGGATTCTTGCCATCTGA
AA sequence Show only first row Show all	>Lus10027642 pacid=23151224 polypeptide=Lus10027642 locus=Lus10027642.g ID=Lus10027642.BGIv1.0 annot-version=v1.0 MVGNKISQRPHTIMIKKLSELLLVSGCHRQESYSTSTTSPRSPLDYPKIQSPTAQKNFHLAGVGLGIVAALDARSSEVLAKHSICCFPKSDPIPAGEEEK ESYGYSNLWSWCDLCRKQLHGLDVYMYRGEKAFCSTECRSRQIIMDEQELLQKRKDKCRRKRSSGGDTSRNSSSPPIFSTGILAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	0	1
AT1G76200			unknown protein		Lus10034571 [exp]	1.4	0.8721
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10037487 [exp]	6.8	0.7837
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	7.1	0.8366
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028470 [exp]	9.3	0.8605
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	10.0	0.8620
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	13.3	0.8476
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	14.0	0.8483
AT4G00770			unknown protein		Lus10009318 [exp]	14.4	0.7144
AT4G10265			Wound-responsive family protei...		Lus10039753 [exp]	14.4	0.8455
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	16.9	0.7881

Compare expression of checked genes

Lus10027642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.