Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036241 [exp] 76 / 5e-16 AT4G20280 188 / 1e-59 TBP-associated factor 11 (.1) Lus10016840 [exp] 42 / 0.0001 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 40 / 0.0009 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10037393 [exp] 39 / 0.001 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1) Lus10005596 [exp] 0 / 1 AT3G04720 66 / 6e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127800 [exp] 129 / 4e-37 ND / Potri.001G405600 [exp] 126 / 3e-36 ND / Potri.003G088100 [exp] 46 / 3e-06 ND / Potri.004G033000 [exp] 46 / 4e-06 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.008G212100 [exp] 45 / 8e-06 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.004G032900 [exp] 45 / 1e-05 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.011G025900 [exp] 45 / 1e-05 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 45 / 1e-05 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 44 / 2e-05 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.016G046500 [exp] 43 / 4e-05 AT1G24020 50 / 4e-08 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10027643 pacid=23151296 polypeptide=Lus10027643 locus=Lus10027643.g ID=Lus10027643.BGIv1.0 annot-version=v1.0 ATGGCATCAACATCAGCAACCATGGAGCTTCCGGGCTATAGGTGCTACCATTTTCCTAACAACGAGACTTGTCTCGGGTTTGATGCAGTAGCTCCAATTC CTGGTGTAGCAACAATGATTACTGTTACGAATTTGGGTCAAAAAAATTTCGAACTAAAAGAGGCTCACCTTCCACGGCACGGTGGGGATGGTGGTACAAC GGAGGTACGACAGAAGTACATCGAGCTGGTGGTACGGCAGCGGCTTCCGGCAGCGGGGAGGAGCAGAGAGCCAGCTGCAATTATGAAGGAAATCAAAAGC CAAAGTAAGGTGAGGCTGGCTCTGGACATCCTATGGAATTCCTTGACTGAAGATTTACATATTGTCGTCCCAAAAATTCTTCCCCACAAAGTGAAGGATG TCCAAGTCCTCCATGGAGATGGTGGCCTCGGTACTACCCTTATCTTCAACTTCACCCTTGACCGTGATGTGAAAACAGAAGGAGCACTGAGTTACCAGAA GGAAGTGATAGTGGAGCGTGACGAGACTCGGCATAGAATTGGGCTGGAAGTAGTGAAAGGTGGTCACCTTGACCATGGCTTTTCTTTCTACAAGACAACT TTCCAACTCAGTAAGGGGCTGGAGGAGGGGGACACAGTGGTTGATGTCACCGTAACTTATGCATATGATCACAAGGAAATTAATGACTCTGAGATTGCAT CCAGAACCATTGCTCACACACTGCAATTTCTCAAGTCCACGGAGGCATATTTGCTCTCTCTTCAGTTGCTGCCTATTCCTAACTAG
AA sequence Show only first row Show all	>Lus10027643 pacid=23151296 polypeptide=Lus10027643 locus=Lus10027643.g ID=Lus10027643.BGIv1.0 annot-version=v1.0 MASTSATMELPGYRCYHFPNNETCLGFDAVAPIPGVATMITVTNLGQKNFELKEAHLPRHGGDGGTTEVRQKYIELVVRQRLPAAGRSREPAAIMKEIKS QSKVRLALDILWNSLTEDLHIVVPKILPHKVKDVQVLHGDGGLGTTLIFNFTLDRDVKTEGALSYQKEVIVERDETRHRIGLEVVKGGHLDHGFSFYKTT FQLSKGLEEGDTVVDVTVTYAYDHKEINDSEIASRTIAHTLQFLKSTEAYLLSLQLLPIPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027643 [exp]	0	1
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	35.7	0.8469
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10018044 [exp]	38.1	0.8509
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	41.1	0.8472
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	52.3	0.8428
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	62.4	0.8263
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	65.6	0.8329
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	92.7	0.8322
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	95.2	0.8344
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	99.3	0.8278
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	110.5	0.7884

Compare expression of checked genes

Lus10027643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.