Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72460 184 / 6e-54 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 155 / 3e-43 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 146 / 5e-40 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 144 / 3e-39 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 139 / 3e-37 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G20690 138 / 4e-37 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 134 / 2e-35 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 127 / 5e-33 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 103 / 9e-25 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 102 / 2e-24 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005175 [exp] 234 / 2e-73 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 167 / 1e-47 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037687 [exp] 153 / 4e-45 AT1G72460 212 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 156 / 2e-43 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 152 / 4e-42 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 143 / 1e-38 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 139 / 2e-37 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 139 / 3e-37 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 138 / 5e-37 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068800 [exp] 188 / 4e-55 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 185 / 7e-54 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 180 / 1e-52 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 168 / 8e-48 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 157 / 5e-44 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 149 / 5e-41 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 146 / 1e-39 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 129 / 5e-34 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 118 / 4e-30 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 102 / 1e-24 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027645 pacid=23151245 polypeptide=Lus10027645 locus=Lus10027645.g ID=Lus10027645.BGIv1.0 annot-version=v1.0 ATGTACCTCTCATCCTTTCCCGACGAAGATGCCCTCATCAAACTCAAATCATCCCTTAACCACCACGGCGCCCTAGACGGATGGTCCCCAGGGACATCCC CTTGCGAATCTCGATGGATCGGAGTCGTTTGCAGCGGTGGTGGCGTCTCCGGCATCCGCCTCTCTAGCCTCTCTCTCTCGGGATCAATTGACATCCATGC CCTCCGCGACCTTCCGGGACTCAGAACAATCACCCTGTCCAACAACTCCTTTGTGGGGCCCATCCCTGCTTTCAACCAGCTGGGACCACTTAAATCCCTC CTCCTCTCCACCAACAAATTCGGTGGCGAAATCCCCAGCGGGTACTTCTCCTCGATGGCTTCCTTGAAGAAAGTGTGGCTCGACGGTAACAACTTTGTCG GGAATATACCGGATTCTATTACGAAGCTCCCACATTTAATGGAACTTCACTTGGAAGACAACCAGTTCTCGGGTCGGATTCCAGATATCAAGGACCCGGG CGTATTGATTTCCTTGGACCTATCCCAAAACAAGCTAGAGGGCTCTATCCCGGAAAGTCTCAGGAAATTCAACGCGTCTTCATTCATGGGGAACGACGCG CTATGCGGGGAGCCACTCGCTATTGCTTGCCCAAGCTCCACCGCGCCAACCGCCCACGATCACGAGGATGATGCAGCAGTGGAATCACCGGAAGAAAGCC ACCCGCAGGCAGCCGCGGGGTCTGTTGGGTTGGTAATTCTCGTGATGGTTGTAATTATTACGATTTTGTCATCAAGGAAGAAGGTCCAACGTCAATGA
AA sequence Show only first row Show all	>Lus10027645 pacid=23151245 polypeptide=Lus10027645 locus=Lus10027645.g ID=Lus10027645.BGIv1.0 annot-version=v1.0 MYLSSFPDEDALIKLKSSLNHHGALDGWSPGTSPCESRWIGVVCSGGGVSGIRLSSLSLSGSIDIHALRDLPGLRTITLSNNSFVGPIPAFNQLGPLKSL LLSTNKFGGEIPSGYFSSMASLKKVWLDGNNFVGNIPDSITKLPHLMELHLEDNQFSGRIPDIKDPGVLISLDLSQNKLEGSIPESLRKFNASSFMGNDA LCGEPLAIACPSSTAPTAHDHEDDAAVESPEESHPQAAAGSVGLVILVMVVIITILSSRKKVQRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72460			Leucine-rich repeat protein ki...		Lus10027645 [exp]	0	1
					Lus10018622 [exp]	3.2	0.8628
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	7.4	0.8342
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	8.8	0.8336
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	10.0	0.8255
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	10.5	0.8433
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	11.7	0.8433
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	12.0	0.8400
					Lus10002111 [exp]	14.1	0.8254
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	17.5	0.8261
AT5G17350			unknown protein		Lus10034636 [exp]	19.0	0.8307

Compare expression of checked genes

Lus10027645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.