Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42950 654 / 0 Pectin lyase-like superfamily protein (.1) AT1G19170 639 / 0 Pectin lyase-like superfamily protein (.1) AT3G48950 357 / 4e-120 Pectin lyase-like superfamily protein (.1) AT3G62110 352 / 3e-118 Pectin lyase-like superfamily protein (.1) AT2G23900 340 / 1e-113 Pectin lyase-like superfamily protein (.1) AT4G23500 331 / 9e-110 Pectin lyase-like superfamily protein (.1) AT3G61490 329 / 4e-109 Pectin lyase-like superfamily protein (.1.2.3) AT4G33440 329 / 4e-109 Pectin lyase-like superfamily protein (.1) AT4G23820 326 / 2e-108 Pectin lyase-like superfamily protein (.1) AT5G41870 325 / 6e-108 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039909 [exp] 773 / 0 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 348 / 2e-116 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 345 / 1e-115 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 342 / 3e-114 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 337 / 2e-112 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 337 / 5e-112 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 335 / 3e-111 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 329 / 4e-109 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 328 / 6e-109 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139500 [exp] 720 / 0 AT3G42950 786 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G062700 [exp] 717 / 0 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 355 / 2e-119 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 354 / 5e-119 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.014G112100 [exp] 350 / 2e-117 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 348 / 1e-116 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 347 / 4e-116 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 347 / 4e-116 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 345 / 1e-115 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 330 / 2e-109 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10027646 pacid=23151200 polypeptide=Lus10027646 locus=Lus10027646.g ID=Lus10027646.BGIv1.0 annot-version=v1.0 ATGGGGGAGAGGGGGGCGGTGGCAATCTCAAAGCTTGGCAAGAGAGGAGGCGGGCAGCTGAATGTGCCTCCTGGGAGATGGCTCACTGCTCCTTTTAATC TCACCAGTCATATCACTTTGTTTCTTGCTGAGGATGCTGTTATACTTGGAATTCAGGATGAGAAGTATTGGACTTTGATGCCTCCATTGCCTTCCTATGG CTATGGAAGAGAGCATCCTGGTTCAAGATATGGGAGCTTAATTCATGGTCAAAATCTCAAGGATGTTGTCATCACAGGACACAATGGTACCATAGATGGA CAAGGTCAAACATGGTGGAAGAAGTACCGCCAAAAGCTTCTCAATCACACCAGGGGCCCTCTTGTTCAAATTATGTTTTCAAGCAATATTGTGATCACTA ATATAACTTTGCGCGATTCTCCATTTTGGACTCTCCATCCATACGACTGCAAGAATGTAACAATAAGGAATGTTACAATTTTGGCCCCCATATTTGAGGC CCCAAATACTGATGGAATAGATCCAGATTCATGTGAGGACATGATAATTGAAGACTGTTACATTAGTGTGGGGGATGATGGAATTGCAATAAAGAGTGGC TGGGATCAGTATGGAATTGCCTATGGACGTCCTTCAAGAAATATTATCATCCGTAATATAGTAGTTCGCTCTATGGTCAGTGCTGGAATATCAATTGGAA GTGAGATGTCTGGTGGGGTATCAAACGTCACAGTAGAGAATGTCCTTATATGGAACTCGAGACGTGCAGTTCGGATCAAGACTGCTCCCGGAAGAGGAGC GTACGTTCGACAAATAACATACCGCAACCTAACATTCGACAATGTAAGAGTTGGGATCGTGATGAAAACTGACTACAATGAACACCCAGATGGTGGATAT GATCCAAAGGCTGTTCCGGTGATTAGGGACATAAGCTTCACCAGCATTCACGGGCAAGGAGTTCGCGTCCCTGTTCGCATACACGGAAGCGAAGAAATCG TAATAAGGAATGTGACATTCCAGGACATGTCTGTTGGACTAACTTACAAGAAGAAGCATATATTTCAGTGTGCCTTTGTTGAGGGACGTGTAATTGGGAC CATTTTCCCACCCCCCTGTGAGAACCTCGACAGGTACGATGAACAAGGACAACTTGTTAGGCGTTCTGCTTCACCCAACTCCACTGACATTGACTATGAT TTTTGA
AA sequence Show only first row Show all	>Lus10027646 pacid=23151200 polypeptide=Lus10027646 locus=Lus10027646.g ID=Lus10027646.BGIv1.0 annot-version=v1.0 MGERGAVAISKLGKRGGGQLNVPPGRWLTAPFNLTSHITLFLAEDAVILGIQDEKYWTLMPPLPSYGYGREHPGSRYGSLIHGQNLKDVVITGHNGTIDG QGQTWWKKYRQKLLNHTRGPLVQIMFSSNIVITNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMIIEDCYISVGDDGIAIKSG WDQYGIAYGRPSRNIIIRNIVVRSMVSAGISIGSEMSGGVSNVTVENVLIWNSRRAVRIKTAPGRGAYVRQITYRNLTFDNVRVGIVMKTDYNEHPDGGY DPKAVPVIRDISFTSIHGQGVRVPVRIHGSEEIVIRNVTFQDMSVGLTYKKKHIFQCAFVEGRVIGTIFPPPCENLDRYDEQGQLVRRSASPNSTDIDYD F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	2.0	0.9900
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	2.0	0.9866
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	2.8	0.9813
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	2.8	0.9889
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	4.6	0.9871
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	5.5	0.9854
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	6.0	0.9752
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10027078 [exp]	8.1	0.9710
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	8.4	0.9818
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	9.0	0.9803

Compare expression of checked genes

Lus10027646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.