Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24120 79 / 3e-18 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 75 / 9e-17 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G41000 73 / 5e-16 YSL4 YELLOW STRIPE like 4 (.1) AT3G27020 69 / 7e-15 YSL6 YELLOW STRIPE like 6 (.1) AT5G24380 68 / 2e-14 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT1G65730 65 / 2e-13 YSL7 YELLOW STRIPE like 7 (.1) AT1G48370 64 / 6e-13 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 62 / 2e-12 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012053 [exp] 93 / 2e-23 AT5G53550 568 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 84 / 9e-20 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 77 / 1e-17 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 76 / 5e-17 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10000879 [exp] 76 / 7e-17 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10033231 [exp] 76 / 7e-17 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10023240 [exp] 75 / 1e-16 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 73 / 4e-16 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10013323 [exp] 64 / 7e-13 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018805 [exp] 81 / 1e-20 AT5G53550 169 / 2e-50 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 79 / 2e-18 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.012G024700 [exp] 77 / 2e-17 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.011G055224 [exp] 77 / 2e-17 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 76 / 3e-17 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G327300 [exp] 68 / 3e-14 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G150500 [exp] 63 / 1e-12 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 63 / 1e-12 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 61 / 6e-12 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069300 [exp] 61 / 6e-12 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10027647 pacid=23151267 polypeptide=Lus10027647 locus=Lus10027647.g ID=Lus10027647.BGIv1.0 annot-version=v1.0 ATGTGTGCAACGTCTCCTCCTTCCATCTCACCCATCATCGAGGTCGTCTCCTCCTTCCATCTCCTCCGCGATCAGCGCCGTCTCCTCCTTTCATCTCCTA CGCGTCTCCTCCTTTCATCTCCGACGCCAACTCCTCTGTTTGCAGCAAGCAATCGATGGCGAGCTTGCCACCGCCCACCGTACTCACTCATCCTGTCGAA CCAAGCTTTGCTTGCCTTTGTGTTTGTCAAGACATGGACCAATCTCCTCAAAAAACTAGGTTTCCTCACCAAGCCCTTCACTAGACAGGAGAATACCTTG ATCGAGACCTGTGTTGTTTCTTGTTACACCATTGCTGTTGGAGGTTTTCGTTAG
AA sequence Show only first row Show all	>Lus10027647 pacid=23151267 polypeptide=Lus10027647 locus=Lus10027647.g ID=Lus10027647.BGIv1.0 annot-version=v1.0 MCATSPPSISPIIEVVSSFHLLRDQRRLLLSSPTRLLLSSPTPTPLFAASNRWRACHRPPYSLILSNQALLAFVFVKTWTNLLKKLGFLTKPFTRQENTL IETCVVSCYTIAVGGFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10027647 [exp]	0	1

Compare expression of checked genes

Lus10027647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.