Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19180 155 / 5e-46 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G74950 144 / 1e-41 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G72450 112 / 4e-29 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G17380 91 / 3e-21 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT3G17860 77 / 6e-16 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT5G20900 70 / 3e-14 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT3G43440 62 / 1e-11 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G70700 59 / 3e-10 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT5G13220 57 / 1e-09 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G48500 56 / 8e-09 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039911 [exp] 498 / 3e-180 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10013166 [exp] 107 / 2e-27 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10008129 [exp] 105 / 2e-26 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10011929 [exp] 66 / 3e-12 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10027639 [exp] 57 / 2e-09 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10002576 [exp] 52 / 6e-08 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10001803 [exp] 52 / 1e-07 AT5G13220 100 / 1e-26 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10014700 [exp] 47 / 6e-06 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10000490 [exp] 45 / 4e-05 AT4G14720 184 / 8e-55 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139400 [exp] 205 / 4e-65 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.001G166200 [exp] 132 / 8e-37 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.003G068900 [exp] 132 / 9e-37 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.018G047100 [exp] 74 / 3e-15 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G217200 [exp] 69 / 2e-13 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.003G165000 [exp] 65 / 2e-12 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.001G062500 [exp] 60 / 1e-10 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.012G044900 [exp] 61 / 2e-10 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 59 / 9e-10 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.002G048500 [exp] 51 / 4e-07 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10027648 pacid=23151310 polypeptide=Lus10027648 locus=Lus10027648.g ID=Lus10027648.BGIv1.0 annot-version=v1.0 ATGTCTAGCTCGCCGGAAATTGTAGAGTTCGCAGGGAAGAAGCTGACCGCCGATAAGCCAAGCTTTTCCCAGAAGTGCACCATGTTGAGTCAGTACTTGA AGGAAAAGGGTAACTTTGGAGATCTAACCCTAGGAATCATGACATCCCCTGCCGACGCTCATCCAGCCTCTGGGAATGATATGCTCCGCCACTCACCGGC CATGACTCTCTTCCCTCTTAGTAACGTACATGCAAACCACCAGATGAGTTGTTTTCTTCCTCCACCTCCTTCTTCCCACCAGCAACCCATGAATTTGTTC CCTCAAAAGGCTGGCTTTTATGATTCCCCTAAGCTGCTTGAACCAAGTGCCAACAAGCCTACCTCTGCCACCTCACAGCTCACCATTTTTTACGGTGGAC AAGTTATTGTGTTCAATGATTTCCCTGCTGATAAGGCGGAGGAAGTTATGCTAATGGCTAGCAGGGGAAGCGCCAAGTCCCAAACTGCTGCTGTTGAGAC GAACCCTGCCTTTGCACCATCAATTACTGCAAAAACTCCGATAGTTTCCTCCTCCACTTCCTCAGTGGCAACTCCTGTTATCCCTACTTCTGGTATTGTT ACCAGTTTTGCCAATAACATGATCCAGGACTGCAAGCAAGTCCAGCAGCCTCACAAACCCATCGCTTGCGATCTACCCATCGCCAGGAGAGCTTCCCTCC ACCGGTTCTTGGAGAAGAGAAAAGACAGAATCACGGCAAGAGCTCCATACCAGACATCAAATGGGTCGGCCTCGTCACAGGGAACTCATACCCCTGAATC GAAGCTAGGCTCAGCAGAAAGCAACAACTCATGGCTTGGGTTGGTTTCACAGTCTCCTCCCAGCGCTAATTGCTGA
AA sequence Show only first row Show all	>Lus10027648 pacid=23151310 polypeptide=Lus10027648 locus=Lus10027648.g ID=Lus10027648.BGIv1.0 annot-version=v1.0 MSSSPEIVEFAGKKLTADKPSFSQKCTMLSQYLKEKGNFGDLTLGIMTSPADAHPASGNDMLRHSPAMTLFPLSNVHANHQMSCFLPPPPSSHQQPMNLF PQKAGFYDSPKLLEPSANKPTSATSQLTIFYGGQVIVFNDFPADKAEEVMLMASRGSAKSQTAAVETNPAFAPSITAKTPIVSSSTSSVATPVIPTSGIV TSFANNMIQDCKQVQQPHKPIACDLPIARRASLHRFLEKRKDRITARAPYQTSNGSASSQGTHTPESKLGSAESNNSWLGLVSQSPPSANC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	0	1
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10039911 [exp]	1.0	0.9498
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	2.0	0.9063
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	5.2	0.8917
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	11.5	0.8039
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	12.6	0.8677
					Lus10020461 [exp]	13.0	0.8593
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	13.0	0.8551
					Lus10039442 [exp]	13.7	0.8676
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	18.8	0.7761
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	20.2	0.8027

Compare expression of checked genes

Lus10027648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.