Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43220 927 / 0 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 919 / 0 Phosphoinositide phosphatase family protein (.1) AT3G14205 860 / 0 Phosphoinositide phosphatase family protein (.1) AT1G22620 700 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT1G17340 649 / 0 Phosphoinositide phosphatase family protein (.1) AT3G51460 174 / 5e-46 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT3G51830 163 / 2e-42 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT5G66020 129 / 7e-31 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G59770 119 / 5e-27 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039913 [exp] 1240 / 0 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10037446 [exp] 995 / 0 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 988 / 0 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10014827 [exp] 712 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 172 / 3e-45 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 161 / 7e-44 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 164 / 2e-42 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 139 / 3e-34 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 138 / 6e-34 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G063700 [exp] 1219 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.006G136400 [exp] 1174 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 1053 / 0 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 1014 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.019G080300 [exp] 688 / 0 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 679 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.005G100500 [exp] 187 / 2e-50 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 169 / 2e-44 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.013G128500 [exp] 96 / 4e-20 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10027650 pacid=23151222 polypeptide=Lus10027650 locus=Lus10027650.g ID=Lus10027650.BGIv1.0 annot-version=v1.0 ATGATTGGTAGGAACAAGGCTAGGACGTACTGGAGAGTCCTGAAGATCGACAGGTTAGATCCTTCTGAGCTCTATATTCGTGAAGATCCTACCACCTATA CAGAGAGTGAATGTTCAGATTTGTTGAGGAGGATAAATGAGGGAAATAAGGCAACTGGCGGTTTGAAGTTTGTTACCATTTGTTATGGAATTGTTGGGTT TGTTAAATTTTTGGGTCCATATTACATGTTGTTAATCACAAAAAGGAGACGGATCGGTGCCATATGTGGTCATAATGTGTATGCTGTATCGAATAGCAAG ATGATTCCAATTCAAAATTCTTCTGTACATGCTGATATTGTTGATTCTAAGAATGAGAACAGATACAAGAAGCTCCTATACATGGTGGACCTCACGAAGG ATTTCTACTTTAGCTACTCATACCATGTTATGCGTAGTCTTCAAAGGAACTTGTGTGATGATGCAAAAGGCCAAGTTCTCTATGAAACAATGTTTGTCTG GAATGAGTTCTTGACTCGTGGAATTCGGCATCACCTTCAAAGTACACTGTGGACTGTTGCATTAGTATATGGATTCTTCAAACAGGAGACACTTTCTATT GCTGGCCGTGACTTCAAACTTACCCTCATTGCACGACGTTCACGACATTATGCTGGCACCAGGTATCTCAAACGCGGTGTTAATGATAAGGGAAGAGTAG CTAATGATGTCGAGACAGAGCAAATTGTTTTTGAGGATGTTCCTGAAGGGCGTCCAGTACAAATAAGCTCAGTTGTGCAGAACCGTGGCTCTATTCCATT ATTTTGGTCGCAAGAAACATCACGTCTCAATATCAAGCCAGACATTATGTTGTCAAGAAAGGACCAAAACTATGAAGCAACCAGACTTCATTTTGAAAAT CTTTCCAAGAGATATGGAAATCCGATAATCATACTGAACTTGATCAAAACTCGAGAGAAGAGGCCTCGAGAATCAATTCTTCGTACTGAGTTTGCTAATG CCATAAGTTACATAAACAAAGATTTACCGGAAGAGAACCGTCTACGGTTCCTTCATTGGGACTTGCACAAACATTCTCGGAGCAAAGCTACCAATGCTTT ATTACTTCTAGGCAAAGTGGCTGCATATGCTTTGACATTGACAGGTTTCTTTTACTGTCAAGTAAACTCGGCATCACACTCTGAGGGCTGCATTGGTTGC CCATCGTCCGAGAATGCTGAAAATTCGTCTTCTCTTAAACATCTTAACAATGGTGACGAGGATGTCAATAACTTAGAGAGAAAAATCTGTGGAGTTGCTA GGGGTTCTAATGAGAAACATTTTTGCAAGCAACCAATTTTCCAGAAAGGAGTTCTGAGGACTAATTGTATAGACTGTCTCGATAGGACAAATGTCGCACA GTTTGCGTATGGGTTGGCTGCTCTTGGATGCCAGTTTCATGCTTTGGGAGTATTAGATTCCCCCAAGATTGATCTTGATGCACCTTTGGCTGATCAATTG ATGGGATTTTACGAGAACATGGGTGATACACTTGCCCATCAGTATGGTGGCTCAGCTGCTCATAACAAGATATTCTCGGAGAGACGGGGCCAGTGGAAAG CTGCAACCCAGTCCCAGGAATTCTTCCGAACGCTTCAACGGTACTACAGTAATGCCTACATGGACGCACAGAAACAAGATGCTATTAACGTATTCTTGGG GCACTTCCAACCACAGCATGGAAAACCTGCTCTTTGGGAGTTGGATTCTGACCAATACTTAAATGTGGGAACGAATGGTCAGGACCATGATACCAGGTCA TTTTTCAAAAGGTCGTTGTCAGATGGGAACATTCTTCGCAATAGCTGCTGCCCTGTATCAGCTACAAATCTCAAACGATATAATGTTTCCAGAACAGCTT TGCCAGAACAATGGCAAGGAGCAGGCAACATGTATTCAGAGTCATCTCCTGCAATATCAAACTGTAATTCTAATATAGCACTTTCAAGGTACACACCCCC GCTACCTCAAAGACAGCTGTTTGGAGAGATACAACGAGATCAAATACATGAAAGTGATCATATTTACTTTTCTGAAGATACGCTAAATTGGTCAAATTTT GTTGATCTAGACTGGCTGTCCTCATCTGGGAATTCAGTTGAAGATGACCCTTTTGACAGGACGTCAATTGCGGGACAGTCATCTGAGAGTGTAACAAACG GAATAACGAGGGAGGCAACGCCAAATGCTAGTGAATATGGATCAATGAGGGTGGAAGCGGAGACAGAAGAGGCAGGAGAGTCATCTGTTGCAAGTAGTTC ACAGGGTGGCAATGTGCTGGAGGAATTTTCTGACAGTTTCGTTAACTGGGTAAACAATGGAGAAACACTCGGCTATTGA
AA sequence Show only first row Show all	>Lus10027650 pacid=23151222 polypeptide=Lus10027650 locus=Lus10027650.g ID=Lus10027650.BGIv1.0 annot-version=v1.0 MIGRNKARTYWRVLKIDRLDPSELYIREDPTTYTESECSDLLRRINEGNKATGGLKFVTICYGIVGFVKFLGPYYMLLITKRRRIGAICGHNVYAVSNSK MIPIQNSSVHADIVDSKNENRYKKLLYMVDLTKDFYFSYSYHVMRSLQRNLCDDAKGQVLYETMFVWNEFLTRGIRHHLQSTLWTVALVYGFFKQETLSI AGRDFKLTLIARRSRHYAGTRYLKRGVNDKGRVANDVETEQIVFEDVPEGRPVQISSVVQNRGSIPLFWSQETSRLNIKPDIMLSRKDQNYEATRLHFEN LSKRYGNPIIILNLIKTREKRPRESILRTEFANAISYINKDLPEENRLRFLHWDLHKHSRSKATNALLLLGKVAAYALTLTGFFYCQVNSASHSEGCIGC PSSENAENSSSLKHLNNGDEDVNNLERKICGVARGSNEKHFCKQPIFQKGVLRTNCIDCLDRTNVAQFAYGLAALGCQFHALGVLDSPKIDLDAPLADQL MGFYENMGDTLAHQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYMDAQKQDAINVFLGHFQPQHGKPALWELDSDQYLNVGTNGQDHDTRS FFKRSLSDGNILRNSCCPVSATNLKRYNVSRTALPEQWQGAGNMYSESSPAISNCNSNIALSRYTPPLPQRQLFGEIQRDQIHESDHIYFSEDTLNWSNF VDLDWLSSSGNSVEDDPFDRTSIAGQSSESVTNGITREATPNASEYGSMRVEAETEEAGESSVASSSQGGNVLEEFSDSFVNWVNNGETLGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	0	1
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	1.0	0.8574
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	3.2	0.7990
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	4.2	0.8196
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	7.2	0.8036
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	8.4	0.7669
AT1G51980			Insulinase (Peptidase family M...		Lus10035000 [exp]	8.4	0.7311
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	10.2	0.7596
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10016549 [exp]	10.7	0.7902
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	13.4	0.7538
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	17.9	0.7500

Compare expression of checked genes

Lus10027650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.