Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20680 595 / 0 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT5G64020 433 / 7e-150 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT2G37720 390 / 4e-132 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 181 / 2e-51 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 172 / 4e-49 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G19160 174 / 5e-49 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 160 / 1e-43 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G11570 154 / 6e-42 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT1G70230 154 / 1e-41 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G25360 154 / 3e-41 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039914 [exp] 941 / 0 AT5G20680 597 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10038577 [exp] 461 / 2e-160 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10037877 [exp] 360 / 7e-123 AT5G64020 404 / 1e-141 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10034039 [exp] 181 / 2e-51 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10002430 [exp] 171 / 2e-47 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 165 / 2e-45 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 162 / 2e-44 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10017004 [exp] 158 / 2e-43 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10004225 [exp] 158 / 2e-43 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140300 [exp] 624 / 0 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G065100 [exp] 495 / 2e-172 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.007G104300 [exp] 480 / 2e-167 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G064875 [exp] 425 / 5e-148 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.002G054400 [exp] 167 / 2e-46 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G203900 [exp] 166 / 4e-46 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G195800 [exp] 166 / 3e-45 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.016G074800 [exp] 160 / 5e-44 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.015G131600 [exp] 162 / 1e-43 AT4G25360 671 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.009G072800 [exp] 156 / 7e-43 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10027651 pacid=23151220 polypeptide=Lus10027651 locus=Lus10027651.g ID=Lus10027651.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGTGTTTTCAAAGTGAAGGGTCGAGAGTTAACTTTTCTCCTAATAGTTCTCGTCTGCACAACTGTTATTATGCTGGCATGGGAAAGAACTC CACTTCTTTCTGCCTCACTTCCTGCAAAAGATATGTTGCAGACATCAGAAATACCAACAAACTTAAGTGAAGTAAAAGAGAAAGATAAAGATTTCATTGA AGCAGACAAAGATCTACCTGTTCATAAATCTCCAAGTTTGACAGAGGCAGAGGGTGATCGTAATCAGAATATTGAACAAAGTTCAAATATAACTACAGAA AGTAGTGCTGATGACAGAACCTCCTCAGGGGAGGAGCAAGAAGAAGAGAATATACCAAAATCCGTTGATAGTCAAGTTTGTAACTATGCCAAAGGGAAGT GGGTGGTAGATGACAGCCTGCCCCTCTACTCTGGATTTGGTTGTAAGCAATGGCTGGCATCGATGTGGGCTTGTAGGTTGATGCAACGGACTGACTTTTC TTATGAGAAGATCAGATGGCAACCAAAAGATTGTGAAATGGAACGATTTGAAGGGCGTGAGTTCTTGAAAAGCATAGTACTGATGCAAGACAAGACACTA GCGTTTGTTGGAGATTCATTAGGGCGGCAGCAGTTCCAGTCCCTAATGTGTATGATCACAGCAGGGTTGAACACAAGTAACGTAGTGGACGTAGGAGTGG AATATGGATTTATTGCGCCTGAAAATGGTCGTCCAAGTGGGTGGGCTTATAGGTTTCCAAGCACAAATACCACAGTACTGTATCACTGGTCTTCTTGCCT CTGTGACATTGAACCTATCGACAAGGAGAACCCAAAAACTCACTATGCCATGCATCTCGACCGCCCACCAGCATTTCTGCGAGATAATCTTGATAGAATC CACGTTCTAGTTCTGAACACGGGACATCACTGGAACCGTGGGAAGCTGAATTCTAACCGCTGGATAATGTATGTAGGGGGTGTGAAGAATACGAACCAGA AGCTGATAGCTATGGGAGATGCTAAAAATTTCACGATACACAGCATTGTTAGTTGGGTGAACAGCCAGCTTCCGGAGCATCCGCTATTGAAGGCATTCTA TCGTAGCATATCTCCAAGACATTTCGTGGGTGGGGACTGGAATACGGGTGGAAGTTGCGATAACACAAAGCCTATGTCGATAGGGAAGGAATTGTTGGAG GAAGTGTCTAGTGATTACAGCGCTAGGAATGCAGTGGCGGGAACCGGGGTAAAGATATTGGACATAACATCTTTGTCGAAGCTGAGAGATGAGGGCCATA TTTCGAGATACAGCATTACAGCTGCAGCTGGGGTGCAGGATTGCTTGCATTGGTGTTTACCTGGTGTTCCAGACACATGGAATGAAATCCTCTTTGCACA AATCGTGGATTCGCGGCCGAGGAGGGTGTAG
AA sequence Show only first row Show all	>Lus10027651 pacid=23151220 polypeptide=Lus10027651 locus=Lus10027651.g ID=Lus10027651.BGIv1.0 annot-version=v1.0 MKGGVFKVKGRELTFLLIVLVCTTVIMLAWERTPLLSASLPAKDMLQTSEIPTNLSEVKEKDKDFIEADKDLPVHKSPSLTEAEGDRNQNIEQSSNITTE SSADDRTSSGEEQEEENIPKSVDSQVCNYAKGKWVVDDSLPLYSGFGCKQWLASMWACRLMQRTDFSYEKIRWQPKDCEMERFEGREFLKSIVLMQDKTL AFVGDSLGRQQFQSLMCMITAGLNTSNVVDVGVEYGFIAPENGRPSGWAYRFPSTNTTVLYHWSSCLCDIEPIDKENPKTHYAMHLDRPPAFLRDNLDRI HVLVLNTGHHWNRGKLNSNRWIMYVGGVKNTNQKLIAMGDAKNFTIHSIVSWVNSQLPEHPLLKAFYRSISPRHFVGGDWNTGGSCDNTKPMSIGKELLE EVSSDYSARNAVAGTGVKILDITSLSKLRDEGHISRYSITAAAGVQDCLHWCLPGVPDTWNEILFAQIVDSRPRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	2.4	0.8887
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	2.4	0.8467
AT3G15470			Transducin/WD40 repeat-like su...		Lus10039933 [exp]	3.7	0.8381
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	4.0	0.8657
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	4.2	0.8386
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	4.5	0.8398
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	7.1	0.8325
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	9.8	0.8380
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	9.8	0.8166
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	10.4	0.8153

Compare expression of checked genes

Lus10027651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.