Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33140 325 / 1e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039915 [exp] 598 / 0 AT4G33140 353 / 1e-121 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216500 [exp] 357 / 4e-123 AT4G33140 350 / 3e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF06941 [flax] [poplar] NT5C 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Representative CDS sequence Show only first row Show all	>Lus10027652 pacid=23151308 polypeptide=Lus10027652 locus=Lus10027652.g ID=Lus10027652.BGIv1.0 annot-version=v1.0 ATGACTTGTTTGAATCGTTACGGCGCCGATCCATCGTTGTACAGAAACCTCTCTTCTTTGTCGTCCCACCCGAGCCCTTCATCATTGGCCCGTACTCCTT CGCTTGATTTTTCTCGTGTCCAGGCTTTCAGGAACATCGTTACTAACAAAGCCGAGACCAAATCAGCTGCGTTCAGAAATGGATTCAAGTTGACGTGTTG CCTTGATCCTCAACACAAGGCAATTAATGATCAGAGGGCGCATGCAATTCCCCCTCATTTGGTGTGTCGGACGGAAGAAAATAATGGTGTTAGTAATGCT GGATTGCTAAGTATTCATACTGCTTGCCATGGAGGAAAGCCTTTTGGATTCGGCAAAAAGTCTGCAACTGACAAAGTTGTTGTTGCAGTTGATGTTGATG AAGTTCTTGGGAACTTCGTGTCAATGTTGAACAAATTCATTGCAGATCGCTACTCCATGAACCATTCAGTATCAGAATACCATGTATACGAGTTTTTCAA GATATGGAATTGTTCAAGAGATGAAGCTGATACTCGGGTTCACGAATTCTTCAAGACCGCTTATTTCAAGAATGGGATCGACCCTCTTCCGGGGGCTCAA CAGGTGCTTCATAAGTTGTCAAGCCACTGTAAATTATCAGTAGTGACGTCCCGTCAAACTGTGATCAAGGACCACACAGTGGAGTGGCTAGAGAAACATT ATCCAGGACTGTTTCATGAGATTCACTTCGGGAACCATTTTGCATTGGAAGGAGAGTCTAAACCCAAGTCAGAAATATGCAGATCTTTAGGTGCAGATAT TCTGATTGATGACAACCCAAGATATGCTATGGAGTGTGCTGAAGTTGGGATTCGGGTCTTGCTTTTCGATTACGAGAACTCATATCCATGGTGCAAATCT GATTCTGTGGAGCAACATCCCTTGGTCACTAAAGTTTATAACTGGCAACAAGTAGAGAAGCACATAGCATCGTTGATTGCCGCTGCTTAG
AA sequence Show only first row Show all	>Lus10027652 pacid=23151308 polypeptide=Lus10027652 locus=Lus10027652.g ID=Lus10027652.BGIv1.0 annot-version=v1.0 MTCLNRYGADPSLYRNLSSLSSHPSPSSLARTPSLDFSRVQAFRNIVTNKAETKSAAFRNGFKLTCCLDPQHKAINDQRAHAIPPHLVCRTEENNGVSNA GLLSIHTACHGGKPFGFGKKSATDKVVVAVDVDEVLGNFVSMLNKFIADRYSMNHSVSEYHVYEFFKIWNCSRDEADTRVHEFFKTAYFKNGIDPLPGAQ QVLHKLSSHCKLSVVTSRQTVIKDHTVEWLEKHYPGLFHEIHFGNHFALEGESKPKSEICRSLGADILIDDNPRYAMECAEVGIRVLLFDYENSYPWCKS DSVEQHPLVTKVYNWQQVEKHIASLIAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10027652 [exp]	0	1
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10026902 [exp]	2.0	0.7492
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	10.8	0.7448
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	19.8	0.6476
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10037338 [exp]	21.7	0.7068
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	27.7	0.6827
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	29.0	0.7019
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	29.0	0.6353
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016066 [exp]	61.1	0.6551
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10003656 [exp]	63.0	0.6233
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	69.2	0.6301

Compare expression of checked genes

Lus10027652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.